NNTTATCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGACCGC
GGAATCATTTTTGCACTCTCTGTTTTGGGATGCACTGTTTTTCTTTAAAA
AACATTATTATCTCTTGTGGTAAGCTAAAAAAAATGGTTTGTTAAAAAGA
AATCTCCATGCCCTAATAACTTCAATTGTTGACCCATATACATAAAAAAT
AAAATAACTAAGTAAAGAAAATAAAAGAAAAGAAAATAGAAGTTCCAAAT
GAAGTCATGGATTTTGCTTTGTTATTCAGTTATATGAACTCTTATGTCTT
GGTTCATTTTTGTATTATTAAAGGAAAATAAATTGTAATTGATAATTTGT
AAAGAATAAAGGTATATTCAGCTCATAGTTCTGGGGTCCTAGAGACTCAA
AGTCACGGTACCACATCTGATGAGGCCTTTTTTATTGTTGAGGAATCTCT
GTAGGGACTGGAGGAGATACATGTCACATGAAAAGACAGCCACAACTAAG
AATGAGGGCACCATCACACTGACTTTTATAGGAGATCCACTTTTGAGCAG
ATAAAGCCATTCCTAAGAGCAAGGTCCTCTTTACTAATGGCCTCACAGAG
GTCCTACCTGACCTTGCCTCTCAAGACTGAAACTGGAAGTGAGAATTCCA
CATGAATTTTGGTGGAAACACTCAGTCCATGATACTTTTTA

NCCAGATGCAGTGGGAGGCTGGGGGCGCCTGGTTCCTAACTGAGGTGAAC
TATAGAAGGTTACCAGATTACCACCCTGATCAGTGGCCTTTACTTTCTGT
GGTTTGGGTTATCTCAAGCCAACTGTGGTTTGGAAGTATTAATGGGAGCT
TCCAGAAATAACCAAGTATGAGTTTAAAGTTGTTTGTTTTTCTTCGTATG
ATGAGGTTTCATTACATCCAGATCTTTTCTGCCTGAGACATACATCTTTT
TTGTTTGTCATGCTTGTCTGTGTGTTTTCTACCTGCCTGTTAGACACTGA
GTGGCCCTCTGACTTGTAATANCTTCTCTAGTAGTGTCACTGTATTGTGT
TCAAGTAATATGGCCCCCTACAGCCTACTGTGACAAGAAAATTTCTGTGT
CACCCACCTCACTTTATCCCGTCACGCATCATCTTCCACCATTGCTGGGT
GAGGTTAAACACAGTACAGGACAATGTTTTGAGAAAGTGATTGTTCTTTT
ATAGGTTTTGTTGACGTATATTGTTAAAATGGCCCTACCTTGTTATCACT
CCAATCTTTTATTCTATCTATTTTATAAATTAAACTTTGTCATAGGAATG
GGTATATAGAGGGGAAACTTATACAACATTGGATTTAAATCACTCTATGG
CTTCTTGTATCATCCTGGCGATCTTGGAATGCATC

Query= MSMg01no145_d15.b1 MSMg01no145_d15.b1 CHROMAT_FILE:
MSMg01no145_d15.b1 PHD_FILE: MSMg01no145_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:15 2005
         (569 letters)



>mm_chr9_28749254_28750219
          Length = 966

 Score =  980 bits (507), Expect = 0.0
 Identities = 554/571 (97%), Gaps = 6/571 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttttgcactctctgttttgggatgcactgtttttctttaaaaaacattattatctct 60
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 catttttgcattctctattttgggatgcactgtttttctttaaaaaacattattatctct 259

                                                                       
Query: 61  tgtggtaagctaaaaaaaatggtttgttaaaaagaaatctccatgccctaataacttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgtggtaagctaaaaaaaatggtttgttaaaaagaaatctccatgccctaataacttcaa 319

                                                                       
Query: 121 ttgttgacccatatacataaaaaataaaataactaagtaaagaaaataaaagaaaagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgttgacccatatacataaaaaataaaataactaagtaaagaaaataaaagaaaagaaa 379

                                                                       
Query: 181 atagaagttccaaatgaagtcatggattttgctttgttattcagttatatgaactcttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atagaagttccaaatgaagtcatggattttgctttgttattcagttatatgaactcttat 439

                                                                       
Query: 241 gtcttggttcatttttgtattattaaaggaaaataaattgtaattgataatttgtaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtcttggttcatttttgtattattaaaggaaaataaattgtaattgataatttgtaaaga 499

                                                                       
Query: 301 ataaaggtatattcagctcatagttctggggtcctagagactcaaagtcacggtaccaca 360
           |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 500 ataaaggtatattcagctcatagttctggggtcctagagactcaaaatcaaggtaccaca 559

                                                                       
Query: 361 tctgatgaggcctttttt-attgttgaggaatctctgtagggactggaggagatacatgt 419
           ||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 560 tctaatgaggcctttttttattgttgagaaatctctgtagggactggaggagatacatgt 619

                                                                       
Query: 420 cacatgaaaagacagccacaactaagaatgagggcaccatcacactgacttttataggag 479
           ||   ||||||||||||||||| |||||||||||||| |||||||||||||||| | |||
Sbjct: 620 ca---gaaaagacagccacaaccaagaatgagggcactatcacactgacttttacaagag 676

                                                                       
Query: 480 atccacttttgagcagataaagccattcctaagagcaaggtcct-ctttactaatggcct 538
           |||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 677 atccacttttgagcagatgaagccattcctaagagcaagg-ccttctttactaatggcct 735

                                          
Query: 539 cacagaggtcctacctgaccttgcctctcaa 569
           |||||||||||||||||||||||||||||||
Sbjct: 736 cacagaggtcctacctgaccttgcctctcaa 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 966
Length adjustment: 10
Effective length of query: 559
Effective length of database: 956
Effective search space:   534404
Effective search space used:   534404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)