Query= MSMg01no145_l18.b1 MSMg01no145_l18.b1 CHROMAT_FILE:
MSMg01no145_l18.b1 PHD_FILE: MSMg01no145_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:54 2005
(512 letters)
>mm_chr9_39127101_39128012
Length = 912
Score = 951 bits (492), Expect = 0.0
Identities = 507/512 (99%)
Strand = Plus / Plus
Query: 1 caaaactatgtctctaagttgagatggaaagtgggtattattgtagaaaagtgtcccact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaactatgtctctaagttgagatggaaagtgggtattattgtagaaaagtgtcccact 260
Query: 61 gtggtgcagaagcaagctttcagtaaacacaccaaataatcattgattcccaaatcaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggtgcagaagcaagctttcagtaaacacaccaaataatcattgattcccaaatcaact 320
Query: 121 ttcacaaagggatctatggaattcttgttttcagacattaacattttctaattcttaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcacaaagggatctatggaattcttgttttcagacattaacattttctaattcttaaga 380
Query: 181 ttcattgtctgtaaatgcctgtgaatattttttgtcatctggaccatctttagctataag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcattgtctgtaaatgcctgtgaatattttttgtcatctggaccatctttagctataag 440
Query: 241 gactggacacaaggtaacactaggattaagacctggacacagcagagcagttattttaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactggacacaaggtaacactaggattaagacctggacacagcagagcagttattttaaa 500
Query: 301 gactcacagtcactgtgacaggatgaacagaatcaacgcaaggcaacacagtctgagtac 360
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 501 gactcacagtcactgtgacaggatgaacagaatcaatgtaaggcaacacagtctgagtac 560
Query: 361 cagcagggaaagtggagttcagcataaagttcaccacatctaaggaactattggcagtat 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 cagcagggaaagtggagttcagcataaagttcaccccatctaaggaactattggcagtat 620
Query: 421 ataactgctaagagagttcatatcaattttctctcaacaggaactaccaaacaagtttat 480
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 621 ataactgctaagagagttcatatcagttttctctcaacgggaactaccaaacaagtttat 680
Query: 481 agtgtgatagagggaatgtgtgtgtttgtgtg 512
||||||||||||||||||||||||||||||||
Sbjct: 681 agtgtgatagagggaatgtgtgtgtttgtgtg 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_l18.g1 MSMg01no145_l18.g1 CHROMAT_FILE:
MSMg01no145_l18.g1 PHD_FILE: MSMg01no145_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:55 2005
(619 letters)
>mm_chr9_39293081_39294099
Length = 1019
Score = 781 bits (404), Expect = 0.0
Identities = 435/448 (97%), Gaps = 5/448 (1%)
Strand = Plus / Minus
Query: 172 taatcttccaggggtgtcaataacttacttcatgttgtcttcaagaatttctgtcttgct 231
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1019 taatcttccagggctgtcaataacttacttcacgttgtcttcaagaatttctgtcttgct 960
Query: 232 gggcagtagtggtacatacatgcctttaatcccagcacttaagaggcagagacaggtgga 291
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 959 gggcagtagtggtacatacatgcctttaatctcagcacttaagaggcagagacaggtgga 900
Query: 292 tttctaagtccaaggccagcctggtctacagagtgagttccaggacagccagcccttcac 351
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 899 tttctgagtccaaggccagcctggtctacagagtgagttccaggacagccagggcttcac 840
Query: 352 agagaaaccctgtcaaaaaaaaaaaaagaatttctgttttactctgtctacttaaatctg 411
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 agagaaaccctgtc-----aaaaaaaagaatttctgttttactctgtctacttaaatctg 785
Query: 412 tgagctttcttgagctattaaatgactaaaccgtaatccagttataaatttaatttgtgt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tgagctttcttgagctattaaatgactaaaccgtaatccagttataaatttaatttgtgt 725
Query: 472 acacagtgattaatttgtttacagttcagtaggatagaagataattatttatttccttca 531
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 724 acacagtgattaatttgtttacagttcagtaggatagaagataattatttctttccttca 665
Query: 532 acttaggtgttttggtattgtcttcttcttaggtcccaagatataagtgggaaaagtaat 591
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 664 acttaggtgttttggtattgtcttcttcttagatcccaagatataagtgggaaaagtaat 605
Query: 592 aactgatctgagtatgcttctctaattg 619
||||||||||||||||||||||||||||
Sbjct: 604 aactgatctgagtatgcttctctaattg 577
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
