Query= MSMg01no146_g07.b1 MSMg01no146_g07.b1 CHROMAT_FILE:
MSMg01no146_g07.b1 PHD_FILE: MSMg01no146_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:07 2005
(556 letters)
>mm_chr9_56499124_56500079
Length = 956
Score = 890 bits (460), Expect = 0.0
Identities = 480/498 (96%), Gaps = 18/498 (3%)
Strand = Plus / Minus
Query: 15 gaacctgcagggtccaggttgccccctgctggatgcccagagttgccatggcgaccctct 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gaacctgcagggtccaggttgccccctgctggatgcccagagttgccatggcgaccctct 421
Query: 75 gccagtcttcccagcatggagacaatcaaaaaataacagcaaggactcttttattctgtg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gccagtcttcccagcatggagacaatcaaaaaataacagcaaggactcttttattctgtg 361
Query: 135 tcccacctgggagccatttaagcctccctattccttttgacacataataataattttttt 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcccacctgggagccatttaagcctccctattccttttgacacataataataattttttt 301
Query: 195 tttgctcttaagattatcttgaaatcccccctcacttttaggctccacggcatagtctcc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tttgctcttaagattatcttgaaatcccccctcacttttaggctccacggcatagtctcc 241
Query: 255 aaaagcctttgatcttaaacacacacttttttacacacacacacacacacacacacacac 314
|||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 240 aaaagcctttgatcttaa------------------acacacacacacacacacacacac 199
Query: 315 acacacacacacacacacagaggtgtacatgctgcgcacctgtttacacaccactctgga 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 acacacacacacacacacagaggtgtacatgctgcgcacctgtttacacaccactctgga 139
Query: 375 gtcagcaaattggcctcctggcgcttcaacagcagagctacagggaaggcatggccccct 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gtcagcaaattggcctcctggcgcttcaacagcagagctacagggaaggcatggccccct 79
Query: 435 tgctgcatctgcacaccactttacagtttgcaagcccctctcccaccgggtataatgtag 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tgctgcatctgcacaccactttacagtttgcaagcccctctcccaccgggtataatgtag 19
Query: 495 gtccatatgcataccctc 512
||||||||||||||||||
Sbjct: 18 gtccatatgcataccctc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_g07.g1 MSMg01no146_g07.g1 CHROMAT_FILE:
MSMg01no146_g07.g1 PHD_FILE: MSMg01no146_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:07 2005
(517 letters)
>mm_chr9_56335328_56336244
Length = 917
Score = 930 bits (481), Expect = 0.0
Identities = 508/517 (98%)
Strand = Plus / Plus
Query: 1 atgtgtgtgccccctgggtctttgacaggggatttcattgctcaggagcactggctgata 60
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtgtgtgttccctgggtctttgacaggggatttcattgctcaggagcactggctgata 260
Query: 61 gccctccttaggactggagaagactctgatgcaaagaatggctgttatttcaccctgtgg 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 gccctccttaggactggagaagactctgatgcaaagaatggctgctatttcaccctgtgg 320
Query: 121 ccagtaagataaagcaagggcaatgcaaccaatgtttctttgctctctgggtcaaaagag 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagtaagataaagcaagggcgatgcaaccaatgtttctttgctctctgggtcaaaagag 380
Query: 181 ataaatctaaatcactcatgctgtggctttttgataggtagcctagaaccgtctatacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaatctaaatcactcatgctgtggctttttgataggtagcctagaaccgtctatacaa 440
Query: 241 atgaaagtttataatccagaatacaaagtaagaaactgcatttttcagaggcctggagag 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 atgaaagtttataatccagaatacaaagtaagaaactgcaaagttcagaggcctggagag 500
Query: 301 atagcttaatggttaagagcactggcacctcttccagaggatgcaggttccattcccagc 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagcttagtggttaagagcactggcacctcttccagaggatgcaggttccattcccagc 560
Query: 361 atccacatggcaatctgtaattccagttccatggaatttaatacacttatcctggtctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccacatggcaatctgtaattccagttccatggaatttaatacacttatcctggtctct 620
Query: 421 gtgggcaccaggcacatatgtggtacatagatatacatacaggcaaaatacccatacaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgggcaccaggcacatatgtggtacatagatatacatacaggcaaaatacccatacaca 680
Query: 481 taaaaataaattttaaaaaattttttaaagaacaaaa 517
||||||||||||| |||||||||||||||||||||||
Sbjct: 681 taaaaataaatttaaaaaaattttttaaagaacaaaa 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
