BAC Information

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BAC

Clone NameMSMg01-146O03
Chromosome9 (Build37)
Map Location 15,596,864 - 15,597,669
singlet/doubletsinglet
Overlap genenone
Upstream geneMre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4
Downstream geneMtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146O03.T7 (MSMg01no146_o03.b1)MSMg01-146O03.TJ (MSMg01no146_o03.g1)
ACCAG350302AG350303
length1,1971,662
length of high quality
(start - end)		800 (88 - 887)---
definitionCHROMAT_FILE: MSMg01no146_o03.b1 PHD_FILE: MSMg01no146_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:11 2005CHROMAT_FILE: MSMg01no146_o03.g1 PHD_FILE: MSMg01no146_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCGTCTCCTTTTNNNTACAGTGGGCGCTNXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATGGTTATCTTTTACCGGTTAAGATGCAACATTTCAC
ATAATTATTCAAATACTATCTTCATTCTTAATGAGATCGCATTTTTGTAT
GTAACCCAGGCTGGCCTCAAACTTTCAACACTCAGACTTTAGCTGCATAG
GGCCTAGGATTAACTGTTGTGAGTCCTTGGGAGGCAGGGACAGGAGATCC
CTAGGGGAAAGGCAGTCTCTGGGGCTCCCTGAGCAACTAGTTTGGATAAA
TTAATGAGAGATACTATCTGAAAACATAATGTAGAAAGCAACTGAGGAAG
ATAGCATATGTTGGATTTCTCGTTTCTATGAGCACATGTGTTTTTGTTCC
CACACATACACAGGTTGCTAAACCGAATTCTAGTCCAGCCTTTATAAGGT
CCCCTTAGAACTGACTGTGTGGGAGGAAGAATTTAGCTTCATTTCTGTCC
TCCTCAGCCTGATTTACTGTGAAGACACATGTGCTCTACTGACCTGGGGT
GCCTGCCCATCATGTTTCCTGTTCACATATTAACAGTAGTACTTAGGGCT
TTCTATTTGGCACTCCGTTTCACTGATCATATATGTACCCACTAAATCAA
ACTAGTTCTATCACAATATCTCTTAAAAGAGTCTTGATTTCTTAAAAAAA
AAAATTCCTACTCAGATTTTGATCCTTTCATGATTTTAGTAATTCCCATG
AGAATTTTAGAACCAGCTTATTGAATCTGACAAAACAAATATCATTGGGA
TTTTTATTGGAATCATAATAATCTCTAAACAAATTGGTCAACTTTTATAT
TTTAACAGTATCAACTCTTTGAATTTTATGTAGGTTTGCTTTCATTTCTT
CCAAAAAATCCTGGACATTGTTTGTAAGCTTTATTGAAGATACTTCGGAC
ACATAGGATCCCAATCCCAGAAGCTTTTCCTCTCCGGGGTCTTCTGTGGC
TGTAACCACCCTGGTCCCGGGGTTACATTCCCGGGGGTCCCAACCCTAAA
CTCCCCTCCCTATCCTTGAACCTGGGGGAAAAATCCCGGAAAAAAAAACC
CCCTTTCTCTTGAAAAAACCTCCCTTGCTTTTCAAGATCTGTGTTCTTCT
TTATTTCTCTACGGTGGTTGGATATCACTTGGGCCTCTTCTAAAATC

GGCCCATTTTAAAAAAGGGGGGNNNGNNNGNNNNNGNNNNGANNNNGGNG
NGAGGGNNGGCCCCTTTAAAAAATAGATGTTTTTTTACCCCACCCCCGTG
TGTATGTGTGTGTGAGTGTTTAGTGAGTATTGGTAAAGAAGTGATGGAGA
GTATAATAGAGGTATGATATAAGTATTTTGGTGTTAGAAGAGATTGTGGT
GTAGATTAGAGTAGTATATGAGGTGAGTGTGAAGTAGATGAGTAAAGTAT
TAGATTGGTGGTATGAAGATATGATATGTAAGGATGTAGTTAGAAGATAG
TTTTTAAGTGATGGTAGAAAATAAATGAGTTAAATGTATTTATAAATGTA
AAGGTGTGAAAGTAAGGTGTTTATTATTATATAGAAAAATAATAGAGTAG
AGTGTAGAAATGTAGAATGGTATAAGTAATGATAGGAGAGAAGTATGATA
TAAGAAAGTTTTTTTTTTTTTTTTTTAGTAGGGTGAGTGAGGAGATGAGT
ATTGGGTGTGTGGGTGAGAAATGAGCATCGCCGAATTAATAGTATAGGAG
AAGTTGAAAGGAAAGTTATTAAATGCTGAGATGGGATAGTGTTGTGGAGA
AATATGTGATAATGAGTTTTATAGATAAAAAGTTGTGTAGATGGGTATTA
AATGTGTATATTTGATAGTTATGGAAGGTAGAGAGATGTTGGAGAGAGGT
TTGAAGTGTATATAATATAAGATAGATAGATGGAGGATATGAAATGATAA
GAAAGAATAATTTAAGTAAGTTATGAAAATGTGGTAAAGATGGAAATGAT
ATTTATAAGATATGGTAGAGTAAATGGAGATATAAATAAGGGGAAATAGT
AATATGGTAAGAATATAAGAATTTGTAGTATAATTAAGTAAGGTTGTAGT
TGATGAGTTTATTATATAAAGATAAAGATTTGATAGAGTAGAAAGAGTTG
AAGAGGGAGTAATGTTGGATGAGTTGGATAAAATGTATAGATGATAATTG
ATGTAGTGTGTAAAATGAAATGTAAAAGAAGAAAAGAGAAGAGATTGTAT
ATTGATGAGATAGAAGTAAGTATGTATAGAGAATGATATAGATCATGGAA
GATGGATATAGTATTGAAGTTTTATTGATGTGGGAAGAGGTTGATTATAT
GAATGAAATATATGAAATATGGATTAAAGAGTGAAGTGTGTGTGTGAGTG
GTGATAAGATAAGGTAAGGATTAGGAGTGTTTGGTAGAATTATAAGATGT
AAATGATGTTATGATGATGAGAATATAGTTTGCTGAGATGATATATGAGA
AGGGTGATATGTGATAATGTGAAGATAAAGAGAGATAAAAGTAAGCTAGT
GTAGTTTTATTAATGTATTTAGGTAAAGACAAGATTAGTGATATGATGAA
CGATGGAAGAGTATAATCTGATTGGAGGGGTATATTAAGATAGACATAGA
ATATGTTTATTATGTGATTAGAATTTGAATGTTAGGTGTTTGAATTTGAA
GTTATTTTATGAGTAAAGTGATAGAGGAATAGTATTGTAGATAAGTGAGT
ATGATCGGAAGTGATTGGATAATGGAGTATATTATATAGATGATGATTAA
TGAATATAAATAATGGTAAGTTATAATTAGAAGTGTATGATATAGAATAT
ATTGATTGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_o03.b1 MSMg01no146_o03.b1 CHROMAT_FILE:
MSMg01no146_o03.b1 PHD_FILE: MSMg01no146_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:11 2005
         (800 letters)



>mm_chr9_15596539_15597744
          Length = 1206

 Score = 1446 bits (748), Expect = 0.0
 Identities = 789/806 (97%), Gaps = 6/806 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    tgcaacatttcacataattattcaaatactatcttcattcttaatgagatcgcatttttg 60
            |||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||||
Sbjct: 1131 tgcaacatttcacataattattcaaatactgttttcattcttaatgagataggatttttg 1072

                                                                        
Query: 61   tatgtaacccaggctggcctcaaactttcaacactcagactttagctgcatagggcctag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 tatgtaacccaggctggcctcaaactttcaacactcagactttagctgcatagggcctag 1012

                                                                        
Query: 121  gattaactgttgtgagtccttgggaggcagggacaggagatccctaggggaaaggcagtc 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 1011 gattaactgttgtgagtccttgggaggcagggacaggagatccctaggggaaaggcggtt 952

                                                                        
Query: 181  tctggggctccctgagcaactagtttggataaattaatgagagatactatctgaaaacat 240
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 951  tctggggctccctgagcaactagtttggataaattaatgagagatcctatctgaaaacat 892

                                                                        
Query: 241  aatgtagaaagcaactgaggaagatagcatatgttggatttctcgtttctatgagcacat 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891  aatgtagaaagcaactgaggaagatagcatatgttggatttctcgtttctatgagcacat 832

                                                                        
Query: 301  gtgtttttgttcccacacatacacaggttgctaaaccgaattctagtccagcctttataa 360
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 831  gtgtttttgttcccacacatacacaggttgctaaaacgaattctagtccagcctttataa 772

                                                                        
Query: 361  gg------tccccttagaactgactgtgtgggaggaagaatttagcttcatttctgtcct 414
            ||      ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771  ggttgccttccccttagaactgactgtgtgggaggaagaatttagcttcatttctgtcct 712

                                                                        
Query: 415  cctcagcctgatttactgtgaagacacatgtgctctactgacctggggtgcctgcccatc 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711  cctcagcctgatttactgtgaagacacatgtgctctactgacctggggtgcctgcccatc 652

                                                                        
Query: 475  atgtttcctgttcacatattaacagtagtacttagggctttctatttggcactccgtttc 534
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 651  atgtttcctgttcacatactaacagtagtacttagggctttctatttggcactccgtttc 592

                                                                        
Query: 535  actgatcatatatgtacccactaaatcaaactagttctatcacaatatctcttaaaagag 594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591  actgatcatatatgtacccactaaatcaaactagttctatcacaatatctcttaaaagag 532

                                                                        
Query: 595  tcttgatttcttaaaaaaaaaaattcctactcagattttgatcctttcatgattttagta 654
            |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 531  tcttgatttctttaaaaaaaaaattcctactcagattttgatcctttcttgattttagta 472

                                                                        
Query: 655  attcccatgagaattttagaaccagcttattgaatctgacaaaacaaatatcattgggat 714
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471  attcccatgagaattttagaaccagcttattgaatctgacaaaacaaatatcattgggat 412

                                                                        
Query: 715  ttttattggaatcataataatctctaaacaaattggtcaacttttatattttaacagtat 774
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411  ttttattggaatcataataatctctaaacaaattggtcaacttttatattttaacagtat 352

                                      
Query: 775  caactctttgaattttatgtaggttt 800
            ||||||||||||||||||||||||||
Sbjct: 351  caactctttgaattttatgtaggttt 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 800
Length of database: 1206
Length adjustment: 10
Effective length of query: 790
Effective length of database: 1196
Effective search space:   944840
Effective search space used:   944840
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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