Query= MSMg01no146_p11.b1 MSMg01no146_p11.b1 CHROMAT_FILE:
MSMg01no146_p11.b1 PHD_FILE: MSMg01no146_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:23 2005
(631 letters)
>mm_chr9_76053736_76054766
Length = 1031
Score = 1199 bits (620), Expect = 0.0
Identities = 629/632 (99%), Gaps = 1/632 (0%)
Strand = Plus / Plus
Query: 1 ctgatcttacacatggtgacttggtcaccgtctaatctaagccatcctatcaaattaact 60
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 201 ctgatcttacacatggtgacttggtcacagtctaatctaagctatcctatcaaattaact 260
Query: 61 gttttgtttgctcttgtgtaataacttgctattatattgtactttaattctaatttttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttgtttgctcttgtgtaataacttgctattatattgtactttaattctaatttttta 320
Query: 121 tgaaaagttaaagttctcctaatgcctataaagcattttataaataatattgaatagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaaagttaaagttctcctaatgcctataaagcattttataaataatattgaatagaaa 380
Query: 181 gtcatttataattattattttattttctggttgaaaattagcttgcctctaccctaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcatttataattattattttattttctggttgaaaattagcttgcctctaccctaaatc 440
Query: 241 ttttttcagttcttattttg-aaaaaaaaataattgaattattttatgtgtatatttttg 299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttttcagttcttattttgaaaaaaaaaataattgaattattttatgtgtatatttttg 500
Query: 300 gatatttctctccgctttacttatcaagtgatttcttaaatattgtagtttactgcaaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatatttctctccgctttacttatcaagtgatttcttaaatattgtagtttactgcaaat 560
Query: 360 gactcagattgatatactaacataaataaattagttctatttcatgaaatattaagtata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gactcagattgatatactaacataaataaattagttctatttcatgaaatattaagtata 620
Query: 420 ttttaacaccacatttaaagttgcattaacaattatagacacacattttatcatcaaaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttaacaccacatttaaagttgcattaacaattatagacacacattttatcatcaaaaa 680
Query: 480 taagtttttgatcttttcttaaaatattttattctcaccaaatatataagcactgggtta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taagtttttgatcttttcttaaaatattttattctcaccaaatatataagcactgggtta 740
Query: 540 gataattgtacatttaaagttgccttaaccaaaggacatagtcgataagacaaatcagca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gataattgtacatttaaagttgccttaaccaaaggacatagtcgataagacaaatcagca 800
Query: 600 acctacagattggggaaaaatcttcactaacc 631
||||||||||||||||||||||||||||||||
Sbjct: 801 acctacagattggggaaaaatcttcactaacc 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_p11.g1 MSMg01no146_p11.g1 CHROMAT_FILE:
MSMg01no146_p11.g1 PHD_FILE: MSMg01no146_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:23 2005
(714 letters)
>mm_chr9_76146623_76147736
Length = 1114
Score = 1000 bits (517), Expect = 0.0
Identities = 529/533 (99%)
Strand = Plus / Minus
Query: 1 tgaaaatgaaatattaatgccagagattagatatcaaggaagcgcccaccgttgaggtaa 60
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 533 tgaaaatgaaatattaatgccagagattagatatcaaggaagcgatgacagttgaggtaa 474
Query: 61 gagaaaactcaaaagtgactaagaagctttgacacaagaaaaattctgctacctgcaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gagaaaactcaaaagtgactaagaagctttgacacaagaaaaattctgctacctgcaatt 414
Query: 121 cttcagataatacaaaaaaatgaggaaaactattttctccttttcattcctagcatcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cttcagataatacaaaaaaatgaggaaaactattttctccttttcattcctagcatcaaa 354
Query: 181 ctatagtgtctaacattcacaagcaccatttacctatttgttcaccttatagtacatgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ctatagtgtctaacattcacaagcaccatttacctatttgttcaccttatagtacatgtg 294
Query: 241 acactgctttcaccttaaaatgcactggaaatatagcttgtttacaaatgtatctctttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 acactgctttcaccttaaaatgcactggaaatatagcttgtttacaaatgtatctctttt 234
Query: 301 aaaccacacaagccagaatagttcatgctgcacttgtatggcagtttctggggagacatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aaaccacacaagccagaatagttcatgctgcacttgtatggcagtttctggggagacatg 174
Query: 361 gacaacccccactcacctcagatagggaaactatgacaggatgaaggaaggatctcacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gacaacccccactcacctcagatagggaaactatgacaggatgaaggaaggatctcacca 114
Query: 421 aaaattaactgggcgaacccatgagttttactgggcttcgttataggaaagctgatgagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 aaaattaactgggcgaacccatgagttttactgggcttcgttataggaaagctgatgagg 54
Query: 481 ggtgacttacaggggcagaaacgactgaaatgaagctgaatcaccaaaagccc 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 ggtgacttacaggggcagaaacgactgaaatgaagctgaatcaccaaaagccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space: 777216
Effective search space used: 777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
