Query= MSMg01no147_i18.b1 MSMg01no147_i18.b1 CHROMAT_FILE:
MSMg01no147_i18.b1 PHD_FILE: MSMg01no147_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:09 2005
(501 letters)
>mm_chr9_95145278_95146178
Length = 901
Score = 930 bits (481), Expect = 0.0
Identities = 496/501 (99%)
Strand = Plus / Plus
Query: 1 ttagagcaccaagtggcagtagccacacaccttctgatcacggtcacacaagagttccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagagcaccaagtggcagtagccacacaccttctgatcacggtcacacaagagttccac 260
Query: 61 cagggttgaatggaaagagagacagtatgagcccactgctaattgctaataagtgaacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagggttgaatggaaagagagacagtatgagcccactgctaattgctaataagtgaacag 320
Query: 121 agataagaaaattgtttctgacttctagaaggttctcagctggacttaggaatgaagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agataagaaaattgtttctgacttctagaaggttctcagctggacttaggaatgaagtga 380
Query: 181 aaacagaaacattcttcctgcaatccatagaagccctaggcttaagtggagctgtaacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacagaaacattcttcctgcaatccatagaagccctaggcttaagtggagctgtaacag 440
Query: 241 gaaggagatcatggttcactgttaggcctacactttggacccaccaagaaaacctctaaa 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 gaaggagatcatggttcactgttaggcctacactttggaccaaccaagaaaacctctaaa 500
Query: 301 actagtaatgcctgcttcccctggagcttcaaagtcaagccagactgtggtccaaatcca 360
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 actagtgatgcctgcttcccctggagcttcaaagtcaagccagactgtggcccaaatcca 560
Query: 361 gagatacctttcaaagctctccgggtgattctactctacaagcaacattgagaactagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagatacctttcaaagctctccgggtgattctactctacaagcaacattgagaactagga 620
Query: 421 gctgacagggccttccaggaggaagaggtgcccgctgtttgcagaaaaagccacagaggc 480
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 621 gctgacagggccttccaggaggaagaggtgcccactgtttgcagagaaagccacagaggc 680
Query: 481 ctccttagagcaactgggagt 501
|||||||||||||||||||||
Sbjct: 681 ctccttagagcaactgggagt 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_i18.g1 MSMg01no147_i18.g1 CHROMAT_FILE:
MSMg01no147_i18.g1 PHD_FILE: MSMg01no147_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:10 2005
(245 letters)
>mm_chr9_95299392_95300036
Length = 645
Score = 389 bits (201), Expect = e-112
Identities = 227/245 (92%), Gaps = 16/245 (6%)
Strand = Plus / Minus
Query: 1 ctcttgccttagttttctgagtttgcaggcacacaccattaaaatctcttcttgacttgt 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctcttgctttagttttctgagtttgcaggcacacaccattaaaatctcttcttgacttgt 323
Query: 61 gaattctcgtttattattgaaggtccttgatcttttgaagcttttatagatatcaacact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaattctcgtttattattgaaggtccttgatcttttgaagcttttatagatatcaacact 263
Query: 121 gtcccaagatgtacacataccttcttgttccctagtcattgccacactgtgcacggatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtcccaagatgtacacataccttcttgttccctagtcattgccacactgtgcacggatct 203
Query: 181 gctatatatatatatatatatatatatatatatatattgttgctgttgcaggttgcaatc 240
||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct: 202 gctatatatatatatat-t---------------tattgttgctgttgcaggttggaatc 159
Query: 241 acttg 245
|||||
Sbjct: 158 acttg 154
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
