BAC Information

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BAC

Clone NameMSMg01-148B10
Chromosome9 (Build37)
Map Location 54,510,661 - 54,511,060
singlet/doubletsinglet
Overlap genenone
Upstream geneRab39, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151
Downstream geneEG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148B10.T7 (MSMg01no148_b10.b1)MSMg01-148B10.TJ (MSMg01no148_b10.g1)
ACCAG351189AG351190
length804714
length of high quality
(start - end)
---496 (72 - 567)
definitionCHROMAT_FILE: MSMg01no148_b10.b1 PHD_FILE: MSMg01no148_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:52 2005CHROMAT_FILE: MSMg01no148_b10.g1 PHD_FILE: MSMg01no148_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTTGCGCTCCTATACNACTCCTATATTTTCAAATCCGCGNATTCTTC
CCCNATTTCTCCTGNTTACTGANTGTNTGGATCTACNNAGCTTTGACTGN
CTTTANNAGCGTTTTNNNTGCTGNNNTGNTAAGGAACTGTATCNNANTAN
ANNCNCCGTGNGCCTCNNATCTCNCTCTNCCCNNAATCCNCTTGTNCNAN
NCTAGGNCTTNTATTNTTGAAAGCCACCCTCATTGAAGGATAACTATTTT
NNTCCTNCTTTTANNNTTTTTTTCCNNNNTTTTTTTNNANTTTTNNNTCC
NCCTTGAAAAATCTTATTTGAGAGAATAAAGAGAAAGAGAGGAGGAAAAA
AATATTAAGGAAAATATAAAAGAGAAAAAGAAAAGATAGGGAAAAAGAAG
AAAAGAAATAAGAACCCCCTCTTTTTTTTTTTTTNNNTNCCCNNNCNTTA
AAAAAAAAAAAGGGGGATAGAAAAGGAAAAAAGAGGAGGGGGGGGCTTNN
NNNNNNNNNNNNNNTNNNNTNNCNNNNNNNNNNNNNNTTNNNNNNNNCNN
NTNNNNNNNAAAAGAAAAGAGGGGGGTGGGGGGGTNNNNNNNNNNNNNNN
NNNTNTNTNCTCTCTCCCCCTCCTTGCTGTTCTTTCCCCTTCTCTTCTTC
CTCTCTCTCTCCTCCTTTCTCTCCCTTTTCTNNTTTTTTTTTTTCTCTCT
CCTTATCTCTCCATCGTAGCAGAGAGANCTTTTTNNNTNNNNNNCTNTNT
TNNCNCTNTNNTTTTTCCCTTTTTTTGTTTTTTCCCCCCACCCATAGTAA
AGGG
ATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGATCCACAGCCATTTTTCTTTTTCCTTCT
CCTGGTCTGTTTTTCAGATGCCAAGCAAAAACCTAAATATGCTTGCTTCA
CCACTCACTGTTTCTCTGACCCTCATACTTAACTTACACTTGACTTTCCA
TCTCCCTCCTCTGGCAGATGTCAGGATACACACACAGACACACAGACACA
CAGACACACAGACACACAGACACACACACAGACACACACACACACACACA
TATATATATATACACACACATACACATATACATATTTATATATATATATG
TATATAATATTATATATTTTTTAACCTTACCTGCCATGTTGTTTTTCTCC
CAAATTATAATAAAACCCCACCCAGGCTTCCTTTTGTGTCTATTTAAATT
CTTTATTAACAAGACCATTGACCCAAAAAGGGAACCTTGATTTCTCCCAA
TGACAATAAGAATCTCTGCCAAAATTTGCACTAAGTTTTGTCTCCCCCAA
ATGATGCTCCTCCCAGAGCATCAGAGAGTAGCCTTATTTGGAAATGGGGT
TTATGCAGGTGTAATCAGCTAAGATAAATTCATACAGGATTGCTATGGAC
CTTAGTCTGATGCTTGATGGCCTTCTAAGGAAACACACATGTAAACCGAG
GGGAAACCCATCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_b10.g1 MSMg01no148_b10.g1 CHROMAT_FILE:
MSMg01no148_b10.g1 PHD_FILE: MSMg01no148_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:52 2005
         (496 letters)



>mm_chr9_54510165_54511060
          Length = 896

 Score =  648 bits (335), Expect = 0.0
 Identities = 384/411 (93%), Gaps = 22/411 (5%)
 Strand = Plus / Minus

                                                                       
Query: 97  gaccctcatacttaacttacacttgactttccatctccctcctctggcagatgtcaggat 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gaccctcatacttaacttacacttgactttccatctccctcctctggcagatgtcaggat 837

                                                                       
Query: 157 acacacacagacacacagacacacagacacacagacacacagacacacacacagacacac 216
           ||||||||||||||||||||||||||||||||||||||    ||||||||||  ||||||
Sbjct: 836 acacacacagacacacagacacacagacacacagacac----acacacacac--acacac 783

                                                                       
Query: 217 acacacacacacatatatatatatacacacacatacacatatacatatttatatat---- 272
           ||||||||| | ||||||||||||| | ||||||||||||||||||||||||||||    
Sbjct: 782 acacacacatatatatatatatatatatacacatacacatatacatatttatatatatac 723

                                                                       
Query: 273 atatatgtatataatat--tatatattttttaaccttacctgccatgttgtttttctccc 330
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 atatatgtatataatattatatatattttttaaccttacctgccatgttgtttttctccc 663

                                                                       
Query: 331 aaattataataaaacccca-----cccaggcttccttttgtgtctatttaaattctttat 385
           |||||||||||||     |     | ||||||||||||||||||||||||||||||||||
Sbjct: 662 aaattataataaa-----attgttctcaggcttccttttgtgtctatttaaattctttat 608

                                                                       
Query: 386 taacaagaccattgacccaaaaagggaaccttgatttctcccaatgacaataagaatctc 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 taacaagaccattgacccaaaaagggaaccttgatttctcccaatgacaataagaatctc 548

                                                              
Query: 446 tgccaaaatttgcactaagttttgtctcccccaaatgatgctcctcccaga 496
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgccaaaatttgcactaagttttgtctcccccaaatgatgctcctcccaga 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)