Query= MSMg01no148_c02.b1 MSMg01no148_c02.b1 CHROMAT_FILE:
MSMg01no148_c02.b1 PHD_FILE: MSMg01no148_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:56 2005
(658 letters)
>mm_chr9_54097704_54098763
Length = 1060
Score = 1208 bits (625), Expect = 0.0
Identities = 649/657 (98%), Gaps = 2/657 (0%)
Strand = Plus / Plus
Query: 4 gaattctgcttctgaacca-acgttctcctgtcgggggactgaagcaggacagggcgagc 62
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgcttctgaaggatacgttctcctgtcgggggactgaagcaggacagggcgagc 263
Query: 63 agagccttggtttctgttgttctttcttgatggaagatatcagaattattcaggctagtc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agagccttggtttctgttgttctttcttgatggaagatatcagaattattcaggctagtc 323
Query: 123 ccaaggagcataatgatgattttttt-ccatctcaatccccatgttcaggggtgctcaga 181
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 324 ccaaggaacataatgatgattttttttccatctcaatccccatgttcaggggtgctcaga 383
Query: 182 ggggcaagaggccatcaatcgtgcaacagaagtacaggaagataatgggtaataacagcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggggcaagaggccatcaatcgtgcaacagaagtacaggaagataatgggtaataacagcc 443
Query: 242 ttgcagcatagactcctctctaacaaaggtgaactccagagcttgaccccaccaaccagc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgcagcatagactcctctctaacaaaggtgaactccagagcttgaccccaccaaccagc 503
Query: 302 atctgtatttccttttcagataaatacagaacttctgaaaatcaattcataagccaagaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atctgtatttccttttcagataaatacagaacttctgaaaatcaattcataagccaagaa 563
Query: 362 aaggaggagacctctcttcatgattaaaatgccaagtggggaagatggacagttaaagga 421
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 564 aaggaggagacctctcttcatgattaaaatgccaagtggggaagacggacagttaaagga 623
Query: 422 atagggcaaatgttagggggaagaccatcagaaaagagaccggtagcgaggcagaagcaa 481
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 624 atagggcaaatgttagggggaagattatcagaaaagagaccggtagcgaggcagaagcaa 683
Query: 482 tgctagcttctacctgttctggtatgttctgtgcatcaatgagcagggtttttgcaaaca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgctagcttctacctgttctggtatgttctgtgcatcaatgagcagggtttttgcaaaca 743
Query: 542 ttttcatcttttgtgtcagttgcaaggtctgagactggtggtttatatcctagaaaactc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttttcatcttttgtgtcagttgcaaggtctgagactggtggtttatatcctagaaaactc 803
Query: 602 agggaacaactgctacacggtgtagccttgcaaactgtctgtgagggtttggaccat 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agggaacaactgctacacggtgtagccttgcaaactgtctgtgagggtttggaccat 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1060
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1050
Effective search space: 680400
Effective search space used: 680400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_c02.g1 MSMg01no148_c02.g1 CHROMAT_FILE:
MSMg01no148_c02.g1 PHD_FILE: MSMg01no148_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:56 2005
(250 letters)
>mm_chr9_54243586_54244235
Length = 650
Score = 443 bits (229), Expect = e-129
Identities = 244/249 (97%)
Strand = Plus / Minus
Query: 1 gtggtgttgtgttgtggtagggtggtttttctctttcaggtcctttgtacttaaaagaaa 60
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 449 gtggcgttgtgttgtggtagggtggtttttctctttcaggtcctttgtaattaaaagaaa 390
Query: 61 cgacatgaacttatttattatgtgtgtgtgttgggggcagggagttgcaggtctcatatg 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cgacaggaacttatttattatgtgtgtgtgttgggggcagggagttgcaggtctcatatg 330
Query: 121 ccttggcagacatggaagtcagaggcaaattcttggtagtcttttttttccaccttgtgg 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccttggcagacataaaagtcagaggcaaattcttggtagtcttttttttccaccttgtgg 270
Query: 181 gtcttggggatcaaaattaggttgccaagtttggcagtaagcaccttttcccacaacagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gtcttggggatcaaaattaggttgccaagtttggcagtaagcaccttttcccacaacagc 210
Query: 241 atttcatta 249
|||||||||
Sbjct: 209 atttcatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space: 154481
Effective search space used: 154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
