BAC Information

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BAC

Clone NameMSMg01-148M21
Chromosome9 (Build37)
Map Location 67,832,021 - 67,832,617
singlet/doubletsinglet
Overlap geneVps13c
Upstream geneTpm1, Tln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911
Downstream geneLOC100041451, Rora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148M21.T7 (MSMg01no148_m21.b1)MSMg01-148M21.TJ (MSMg01no148_m21.g1)
ACCAG351697AG351698
length790719
length of high quality
(start - end)
54 (66 - 119)641 (71 - 711)
definitionCHROMAT_FILE: MSMg01no148_m21.b1 PHD_FILE: MSMg01no148_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:49 2005CHROMAT_FILE: MSMg01no148_m21.g1 PHD_FILE: MSMg01no148_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCCGAGCTCCGCGGAATTC
TCAAGCTTCCGAATCAAGGCAGTAGGAGCTTGGAGCAGCTAGCCATGTGA
CATCCGTGATAAAGACAGGCGTGGCGTGGAGGTGTGTGTCTGTCTATCCT
TCCTTTTCTTTCCTCCCCACCTTTCTTCCCCTCCCCCCCACTTTACCCCT
TCCCTCTCCCCCCCTTTTCTCCCCCTTCCCCCTTTCTTCCCTCCCCCTCT
TCCCCCCCCCCCTCTCCCCCCCTCCTTCCCCTTCTTCCCTTCTTTCCTCC
CTTCCCCCCTCTTTCTTCTTTTTCCCCCCCCCCTCCCCCCCCCACTTTCC
CTTCCTTTCCCCCCCCCCCCCCCCTCTTCTCTTCTCCTATACTTCCTTTC
CGTTTGCCGCCCCCCCCCCCCCTATTATTATTAACTCTTCCCTTCCCCTT
CCTTCCCCCCCCCTCCCCCCTTTCCTTCTCTCTTTCCCCCCCCTTCTTTC
CCCCCTCTTCCCCCTTTTCCCCCCCCTCCCCCCTTCTCCCCCTTCCCCTT
TCCCCCCCCCTTCCCTTTACCCCTTTTATTTATCTCTCCTCCTCTTTCCC
CCTTTTCCCCCTCTCCCTCCTCCTTCTCTCCCTCCCCCCCCCCCCCTTTC
TCCTTTCTATTTCTCTCCTCCCCTCCCCCCCCTTCTTTTCCTCTCCCTCT
TTTCTCTCCCCCCTTTTTTNTCTTTCTCGCTCCCCCCTTATCCCCTTTTT
TACCCTCTCTTTTCTTTTCTCCGCCTCTCCCCTCCTCCTC
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGTCTATACAGAGAGTTCC
GAGCCAACCAGGGCTACATAGTAGACCCTGTCCAAAAAGAAAAAGAAAAA
AGAAAAAAAAAAGCTTGTAGCTTGTATTTAACAGTTTCATTAACTTCAAA
TATATACTAGTGATCAAGTTTCTACTTTGGCTTCAATATTAGTTGATAGA
TAAGACACTGTTAAAGCACAAAATTAAACATTCCCATTATTATTTTAAAT
AGAAATTAAAATATCATTTACTTTGGGAATTAGCTGGGGTCTAAAGGCTA
ATTTATAGTTATTTTGTTCACATCAAGAAAACTCTCTGAGGATTAAATTT
ATGAAGTGTCAATGCCGCATGCACATGTCCATTTGTACAGGTGTGTGTGA
AGGGGTTCACACATGTTACGTGTGGCATATGCATGTGGGCATTTGTGAAC
CTGTGGAGGACTGAGTTCATTATCAGGGGTCTTCCTCCATTACTATCTTT
TGCTTTGCTCTGATTTCGAGCAAGATCTCTCACAAAATCTGGTACTCACT
AAAAGTAAGTGAGCTGGCCGTCAACAAACCCCAGGTTCTGCCTGCTTCCT
GACCCCAGCTCCATTCAGCACTGGACAGACACGCGCCACCCACCATGTGT
GAGTACTGGAGATCTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_m21.g1 MSMg01no148_m21.g1 CHROMAT_FILE:
MSMg01no148_m21.g1 PHD_FILE: MSMg01no148_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:49 2005
         (641 letters)



>mm_chr9_67831577_67832617
          Length = 1041

 Score = 1093 bits (565), Expect = 0.0
 Identities = 590/599 (98%), Gaps = 2/599 (0%)
 Strand = Plus / Minus

                                                                        
Query: 43   gctacatagtagaccctgtccaaaaagaaaaagaaaaaagaaaaaaaaaagcttgtagct 102
            ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 1041 gctacatagtagaccctgtccaaaaagaaaaagaaaaa--aaaaaaaaaagcttgtagct 984

                                                                        
Query: 103  tgtatttaacagtttcattaacttcaaatatatactagtgatcaagtttctactttggct 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  tgtatttaacagtttcattaacttcaaatatatactagtgatcaagtttctactttggct 924

                                                                        
Query: 163  tcaatattagttgatagataagacactgttaaagcacaaaattaaacattcccattatta 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 923  tcaatattagttgatagataagacactgttaaagcacaaaattaaacattctcattatta 864

                                                                        
Query: 223  ttttaaatagaaattaaaatatcatttactttgggaattagctggggtctaaaggctaat 282
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 863  ttttaaatagaaattaaaatatcatttactttgggaattagctggggtttaaaggctaat 804

                                                                        
Query: 283  ttatagttattttgttcacatcaagaaaactctctgaggattaaatttatgaagtgtcaa 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803  ttatagttattttgttcacatcaagaaaactctctgaggattaaatttatgaagtgtcaa 744

                                                                        
Query: 343  tgccgcatgcacatgtccatttgtacaggtgtgtgtgaaggggttcacacatgttacgtg 402
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 743  tgccgcatgcacatgtccatttgtacaggtgtgtgtgaaggggtgcacacatgttacgtg 684

                                                                        
Query: 403  tggcatatgcatgtgggcatttgtgaacctgtggaggactgagttcattatcaggggtct 462
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 683  tggcatatgcatgtgggcatttgtgaacgtgtggaggactgagttcattatcaggtgtct 624

                                                                        
Query: 463  tcctccattactatcttttgctttgctctgatttcgagcaagatctctcacaaaatctgg 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623  tcctccattactatcttttgctttgctctgatttcgagcaagatctctcacaaaatctgg 564

                                                                        
Query: 523  tactcactaaaagtaagtgagctggccgtcaacaaaccccaggttctgcctgcttcctga 582
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563  tactctctaaaagtaagtgagctggccgtcaacaaaccccaggttctgcctgcttcctga 504

                                                                       
Query: 583  ccccagctccattcagcactggacagacacgcgccacccaccatgtgtgagtactggag 641
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 503  ccccagctccattcagcactggacagacacgcaccacccaccatgtgtgagtactggag 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)