Query= MSMg01no148_n05.b1 MSMg01no148_n05.b1 CHROMAT_FILE:
MSMg01no148_n05.b1 PHD_FILE: MSMg01no148_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:51 2005
(539 letters)
>mm_chr9_44329995_44330933
Length = 939
Score = 986 bits (510), Expect = 0.0
Identities = 530/538 (98%), Gaps = 4/538 (0%)
Strand = Plus / Minus
Query: 4 gaattccttctctctcc--cttccatgggttccagggagcaagctcatcatttgtcagtt 61
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaattcct--tctctccttcttccatgggttccagggagcaagctcatcatttgtcagtt 682
Query: 62 gtcaggcatgtatagagagcaccttttcccatcgaggctcttttgtcccttgaactcaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcaggcatgtatagagagcaccttttcccatcgaggctcttttgtcccttgaactcaaa 622
Query: 122 gatcacctttgatctcccacacacttgctggccatgggcagctactaaacttcttgatgg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatcacctttgatctcccacacacttgctggccatgggcagctactaaacttcttgatgg 562
Query: 182 ctaagagccaggagaagaaccctagcacctagagtaggcatggccagaggtcaccccact 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaagagccaggagaagaaccctagcacctagagtaggcatggccagaggtcaccccact 502
Query: 242 ctggcgaggtgggcccgggtggccttggaggagatcctgtccaggagaaccaccatgagt 301
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggcgaggtgggccctggtggccctggaggagatcctgtccaggagaaccaccatgagt 442
Query: 302 tctttcctgtcactcctcaaatcagaggtccatggtggggcttgtctggaacccacacag 361
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 tctttcctgtcactcctcaaatcagaggtccgtggtggggcttgtctggaacccacacag 382
Query: 362 actagttctcaaataaagttctaggcgtcaggaggggaggctgccatagaacagggtgaa 421
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actagttctgaaataaagttctaggcgtcaggaggggaggctgccatagaacagggtgaa 322
Query: 422 gctggtctaagtctcgcttccctgacctttcctcatagacgatcaccaggagccatgaac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctggtctaagtctcgcttccctgacctttcctcatagacgatcaccaggagccatgaac 262
Query: 482 tcattgtgaccagagcatcacaggtcacagtctgtccacacacaagtgtctcagttca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattgtgaccagagcatcacaggtcacagtctgtccacacacaagtgtctcagttca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_n05.g1 MSMg01no148_n05.g1 CHROMAT_FILE:
MSMg01no148_n05.g1 PHD_FILE: MSMg01no148_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:51 2005
(565 letters)
>mm_chr9_44145867_44146831
Length = 965
Score = 944 bits (488), Expect = 0.0
Identities = 535/570 (93%), Gaps = 32/570 (5%)
Strand = Plus / Plus
Query: 1 ctgcagctcatccagcttccgaaggcgggtgttgaggtttccccgctgtggagcgttgct 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcagctcatccagcttccggaggcgggtgttgaggtttccccgctgtggagcgttgct 260
Query: 61 aaggagaagtcaagacctacccagtgcaccctctgccccacagtctcttttcccccctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggagaagtcaagacctacccagtgcaccctctgccccacagtctcttttcccccctct 320
Query: 121 agctaacttttaaaaaacttttgtttttgttgtgtttttgttgagtggtggtgtatacac 180
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 agctaacttttaaaaaacttttgtttttgttg-----------agtggtggtgtatacac 369
Query: 181 ctttaaatcccagcactggaggcagatacagatctccatgaattcaaggctaaatctggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctttaaatcccagcactggaggcagatacagatctccatgaattcaaggctaaatctggt 429
Query: 241 ctacagagagagttccaggacaggctgggctatacagaaaaagcctgtctagaaaaatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctacagagagagttccaggacaggctgggctatacagaaaaagcctgtctagaaaaatgg 489
Query: 301 tagaaa-----aaaaaaaaaaaaaaaaagctgggcagtggtgacacatgcccttaagccc 355
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tagaaatgaaaaaaaaaaaaaaaaaaaagctgggcagtggtgacacatgcccttaagccc 549
Query: 356 acaatttgggaggcagaggtagccggatttctgagttggaggctaggctggtctataaag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 acaatttgggaggcagaggtagccggatttctgagttggaggctaggctggtctataaag 609
Query: 416 tgagttccaggacagccagggatatacagagaaaccccgtctcgaaaaactaactaacta 475
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 610 tgagttccaggacagccagggatatacagagaaaccctgtctcgaaaaactaactaacta 669
Query: 476 actaaataactaactaaataaataaataataaaataaaaagacttctttggagtcaggcg 535
| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 670 a----------------ataaataaataataaaataaaaagacttctttggagtcgggcg 713
Query: 536 tggttagagcacgcctttaatcccagcact 565
||||||||||||||||||||||||||||||
Sbjct: 714 tggttagagcacgcctttaatcccagcact 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
