BAC Information

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BAC

Clone NameMSMg01-148O07
Chromosome9 (Build37)
Map Location 96,217,308 - 96,217,658
singlet/doubletsinglet
Overlap geneTfdp2
Upstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5
Downstream gene1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148O07.T7 (MSMg01no148_o07.b1)MSMg01-148O07.TJ (MSMg01no148_o07.g1)
ACCAG351763AG351764
length730741
length of high quality
(start - end)
267 (45 - 311)341 (75 - 415)
definitionCHROMAT_FILE: MSMg01no148_o07.b1 PHD_FILE: MSMg01no148_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:56 2005CHROMAT_FILE: MSMg01no148_o07.g1 PHD_FILE: MSMg01no148_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGGAGCTGCGGCTCAATTGCACTCTCTGTCTCTGTCTGTCTGTC
TCCCCCACCCCACCCCACCCCCCCAACACCACCCTGGGGAATCAAGCTGA
GATTGTTAGGCTCAGCAGCAGCCTAACCCCGCTGAGGTTCTCCCACCCCT
GGGGAATCAGATCTCACTAATAGCATAATGGTCCTGAGGATTGAACTCAT
GTCATCAAAAGCTTGGTGACAGGTGAGCCATTATGCCAGTCTCTGTTTTT
GCCTTTTGGCCATTACCAATATTTTACTACAACATTATAACTCATATTTC
TTACACAAAATGTGAAGTCTATAGCTGTCTTAGTCTGCTTTCTCTCGATG
TAACAACTCGCTGCGCCCCCCCTTTAGTATCAGTTAGCTTGTCCATCCCA
GGTCACAGTCCATTGAGGGGACCCAAGGCAGGAACTGATGCAGAGACCAC
CTAGGAATGCTGGTTTCTAGCTTGCTCCTCTCCACGTATTCCGCCCGAGN
TCTAACATTATTTAGGAAAATCTCTGCTCACGTTTGGCACTTTTCCAGTG
TTATCCGGCCCTTCCCCTTTCTATTCTTATTGTTCAATCTGCCCTGTACT
CTTGTCTCTATATATACCCGATTTATAGATTCGCCCCGCTAGCGCCTCTC
CTCCCTTTATATATCCTACCTCGTCTCCTG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAGTAACACCTTGACTACTCCCCTT
TCCTTCAATGCTTTTTTTTCCCAAGACATTTTCTGAAATCATGTGTGAAG
CCCTGAGTTTCGGGTGAATGGATAAGAAAGTAGGTACCCATGGAAGAGGT
GTGGATTCCCCTGGATATGGGAATTGTGATCTGTCCAATAGGATCTGGAC
TGAAAGGACAGTGTATACTTGGTCGTCTCTCTAGCTTTCTTCATGTAAGA
CCTGGTAAGGTAGCTTACGGTGTATAGTGGTAAGAATGTGAACTGTCTTG
GACATCTGATGTCCTCATCGTGAAACCCCACGACTGTGATGTTAATAGTC
AGGATTGCGTAAGTCACACCCCTCTTTAAAAAGAATGCACATCTTATGGG
TCAGGCAGATGTTCACACCCGGCACCCCTTCCCTTGTCTCTCACTTTGAG
TGCATGTATGGTGTGTGTGCTCACGTGCTCTACCAGCTAGATATGTTCCC
TGAGACAGGTTTGCCCACTGATACTTAGGCTTTGCTAATTATTCCCTATT
TTTTTCCCTTTTTACCTTTCCGTTCTTCAGGTTCCTGTCTGTTCGTCTCC
CCCCCCCCTGGATTTTTATTACTTGATCCTATTTTCTCTTATCTTGGGCA
TACTGCTCTTTACTCGTTATTGCTTTTGCTTTTTTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_o07.g1 MSMg01no148_o07.g1 CHROMAT_FILE:
MSMg01no148_o07.g1 PHD_FILE: MSMg01no148_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:57 2005
         (341 letters)



>mm_chr9_96217264_96218004
          Length = 741

 Score =  613 bits (317), Expect = e-180
 Identities = 338/351 (96%), Gaps = 10/351 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtaacaccttgactactcccctttccttcaatgcttttttttcccaagacattttct 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 395 aaagtaacaccttgactactcccctttccttcaatgctttttttttccaagacattttct 336

                                                                       
Query: 61  gaaatcatgtgtgaagccctgagtttcgggtgaatggataagaaagtaggtacccatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gaaatcatgtgtgaagccctgagtttcgggtgaatggataagaaagtaggtacccatgga 276

                                                                       
Query: 121 agaggtgtggattcccctggatatgggaattgtgatctgtccaataggatctggactgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agaggtgtggattcccctggatatgggaattgtgatctgtccaataggatctggactgaa 216

                                                                       
Query: 181 aggacagtgta----------tacttggtcgtctctctagctttcttcatgtaagacctg 230
           |||||||||||          |||||||||||||||||||||||||||||||||||||||
Sbjct: 215 aggacagtgtatactcttaactacttggtcgtctctctagctttcttcatgtaagacctg 156

                                                                       
Query: 231 gtaaggtagcttacggtgtatagtggtaagaatgtgaactgtcttggacatctgatgtcc 290
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gtaaggtagcttacggggtatagtggtaagaatgtgaactgtcttggacatctgatgtcc 96

                                                              
Query: 291 tcatcgtgaaaccccacgactgtgatgttaatagtcaggattgcgtaagtc 341
           |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 95  tcatcgtgaaaccccacgactgtgatattaatagtcaggattgcgtaagtc 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)