Query= MSMg01no149_n09.b1 MSMg01no149_n09.b1 CHROMAT_FILE:
MSMg01no149_n09.b1 PHD_FILE: MSMg01no149_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:14 2005
(458 letters)
>mm_chr9_56630440_56631297
Length = 858
Score = 754 bits (390), Expect = 0.0
Identities = 443/474 (93%), Gaps = 21/474 (4%)
Strand = Plus / Minus
Query: 6 gaattcaagtgagattcgaggcttccagtccctcctgatctcggccccatgcagccagtg 65
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gaattcaagtgagatttgaggtttccagtccctcctgatctcggccccatgcagccagtg 719
Query: 66 ctgtcccttcattgaagtgaggctcactgcacaccatct--------------------- 104
||||||||||||||||||||||||| |||||||||||||
Sbjct: 718 ctgtcccttcattgaagtgaggctctctgcacaccatctcggacagctccttcctgtggc 659
Query: 105 cggtgctgcatgctctccccatggctcccacaccaccttgtctgtaactggtgcctgaca 164
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 658 cggtgctgcatgctctccccatggctcccataccaccttgtctgtaactggtgcctgaca 599
Query: 165 tgtagggggcactgcaggcttcagcctcctctagcgtgggactggccttactcagttctc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 598 tgtagggggcactgcaggcttcagcctcctctagcgtgggactggccttactcagttttc 539
Query: 225 aatcattgggattgattcctcaattcctgcctggcagttctcaatcactttggggtatgg 284
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 538 aattattgggattgattcctcaattcctgcttggcagttctcaatcactttggggtatgg 479
Query: 285 acaccctatatctgaagggtcctgatatgtgtgtgcagaagcccccattccagcatatat 344
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 478 acaccctatatctgaagggtcctgatatgtgtgtgcagaagcccccattccagcgtatat 419
Query: 345 tcatacgtatattcagtgtatattcagctctgcattgtttcagtgctcacaggctcctgg 404
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 418 tcatacgtatattcagtgtatattcagctctgtattgtttcagtgctcacaggctcctgg 359
Query: 405 cgtccataagttagtgcccacatgctgcccatcatgctgacataggacaggaag 458
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 358 cgtccataagttagtgcccacatgctgcccatcatgctgacacaggacaggaag 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_n09.g1 MSMg01no149_n09.g1 CHROMAT_FILE:
MSMg01no149_n09.g1 PHD_FILE: MSMg01no149_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:14 2005
(444 letters)
>mm_chr9_56533970_56534818
Length = 849
Score = 793 bits (410), Expect = 0.0
Identities = 437/448 (97%), Gaps = 6/448 (1%)
Strand = Plus / Plus
Query: 1 ctaagtgctaggtgtgccataggtaccagcaatgcacgacacgagggcatgagggcgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagtgctaggtgtgccataggtaccagcaatgcacgacacgagggcatgagggcgtga 260
Query: 61 c--agaggagtctggccctgtcacaaagccaggtgataagcagaaaaacaagacacttcc 118
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 catagaggagtctggccctgtcacaaagccaggtaataagcagaaaaacaagacacttcc 320
Query: 119 taagagtgtcaagctcagcgacaaccctaacatccagccacagaggagggaac---agaa 175
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 taagagtgtcaagctcagcgacaaccctaacatccagccacagaggagggaacaggagaa 380
Query: 176 ggacaggggggcgctctagatagagggtcaggggaggtcttcctgaagggggccacaatt 235
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ggacagggggacgctctagacagagggtcaggggaggtcttcctgaagggggccacaact 440
Query: 236 gaacttaggcttcaggaagtgaggcttccaggagcctgaggcactgaaggccaagatggg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaacttaggcttcaggaagtgaggcttccaggagcctgaggcactgaaggccaagatggg 500
Query: 296 gcctttggctctgatcccaagaacaagaaaagccactggagggccttaaccagataaatg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctttggctctgatcccaagaacaagaaaagccactggagggccttaaccagataaatg 560
Query: 356 caatgatgtttttcttcattgttaaaagtcctctcaagctgccaactggagcctgggctg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caatgatgtttttcttcattgttaaaagtcctctcaagctgccaactggagcctgggctg 620
Query: 416 cttcccccagagcaaagggg-tgggggg 442
||||||||||||||| |||| |||||||
Sbjct: 621 cttcccccagagcaaggggggtgggggg 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 849
Length adjustment: 10
Effective length of query: 434
Effective length of database: 839
Effective search space: 364126
Effective search space used: 364126
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
