Query= MSMg01no149_n21.b1 MSMg01no149_n21.b1 CHROMAT_FILE:
MSMg01no149_n21.b1 PHD_FILE: MSMg01no149_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:16 2005
(562 letters)
>mm_chr9_118112474_118113435
Length = 962
Score = 793 bits (410), Expect = 0.0
Identities = 457/482 (94%), Gaps = 17/482 (3%)
Strand = Plus / Minus
Query: 1 gtttcttaagtttattttcctttattctttgtacagtgggaaacacactttctattagta 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtttcttaagtttatttccctttattctttgtacagtgggaaacacactttctattagta 407
Query: 61 aaaccctgattcaagaatggatatatttgtttatttaactagttctctcattatatcaaa 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaaccttgattcaagaatggatatatttgtttatttaactagttctctcattatatcaaa 347
Query: 121 tgcccactcttcataactgatagcactgtgtctcatgatgctcagtataaccaatgattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgcccactcttcataactgatagcactgtgtctcatgatgctcagtataaccaatgattt 287
Query: 181 tggttccttcttaccattgatctgggaagaatacaaagttggtccacaaatgtcactcgc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 286 tggttccttcttaccattgatctgggaagaatacaaagttggtccacaaatgccactcgc 227
Query: 241 agcatgaaatcaag-gtttatgctgctaaaccaggcactgtgggatacatgcctctaatc 299
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 agcatgaaatcaagag-ttatgctgctaaaccaggcactgtgggatacatgcctctaatc 168
Query: 300 ccagctcccaagaggtagaggcaggtgaagctctgtgaatccaggccagcctggtctagg 359
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ccagcttccaagaggtagagacaggtgaagctctgtgaatccaggccagcctggtctagg 108
Query: 360 aggtgtgctggaggcagtgagcacgctgagcacacaaacgaagagaatagtgcacccaag 419
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 107 aggtgtgctggaggcagtgagcatgctgagcacacaaacgaagagaatagtacacccaag 48
Query: 420 aatagtgcacccaggcactgcagccctagacgcctcctttgttacaacacaacttgtctt 479
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 47 ---------------cactgcagccctagacgcctcctttgttataacacaacttgtctt 3
Query: 480 gc 481
||
Sbjct: 2 gc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_n21.g1 MSMg01no149_n21.g1 CHROMAT_FILE:
MSMg01no149_n21.g1 PHD_FILE: MSMg01no149_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:16 2005
(550 letters)
>mm_chr9_117954606_117955555
Length = 950
Score = 1040 bits (538), Expect = 0.0
Identities = 547/550 (99%)
Strand = Plus / Plus
Query: 1 actatacagcccaagcagccatgaactggtggcagtccttctgcctcagactttcaggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatacagcccaagcagccatgaactggtggcagtccttctgcctcagactttcaggta 260
Query: 61 gagctgtgagctacccacccattctctaaggtcttgatgaatggaagattttctaaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctgtgagctacccacccattctctaaggtcttgatgaatggaagattttctaaagaa 320
Query: 121 aagttcattatgaggggaaaacattactagttctggttctaaactcaaacagcctctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttcattatgaggggaaaacattactagttctggttctaaactcaaacagcctctgct 380
Query: 181 gcaccctaatctcacctggtcacattcatggcccagttttctcctttgtaacaaggcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaccctaatctcacctggtcacattcatggcccagttttctcctttgtaacaaggcttt 440
Query: 241 aataaggtgttgtacctcctagtatcatcgtgaagatttaagtagaggcctccaagcagc 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcaggtgttgtacctcctagtatcatcgtgaagatttaagtagaggcctccaagcagc 500
Query: 301 atagcgccaagtagttccttggtggtcgtatgaggtgattgtgtgttgctgatgtaaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagcgccaagtagttccttggtggtcgtatgaggtgattgtgtgttgctgatgtaaaat 560
Query: 361 aactatgagaggctacttataaagaaaaggaacaccttttgttaacagttttagttagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactatgagaggctacttataaagaaaaggaacaccttttgttaacagttttagttagaa 620
Query: 421 gttataagccttaagactggtgccccaactttcagcctctagctagagtaaatgggtggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttataagccttaagactggtgccccaactttcagcctctagctagagtaaatgggtggc 680
Query: 481 ccgccatggcaggtcattcaggagtaaactgttcccctcagatttaggaaaagaggtagc 540
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 ccgccatggcaggtcattcaggagtaaactgttcccaacagatttaggaaaagaggtagc 740
Query: 541 agatgcttcc 550
||||||||||
Sbjct: 741 agatgcttcc 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
