Query= MSMg01no149_o05.b1 MSMg01no149_o05.b1 CHROMAT_FILE:
MSMg01no149_o05.b1 PHD_FILE: MSMg01no149_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:18 2005
(251 letters)
>mm_chr9_89614402_89615053
Length = 652
Score = 404 bits (209), Expect = e-117
Identities = 242/253 (95%), Gaps = 3/253 (1%)
Strand = Plus / Plus
Query: 1 catttctaaagaggacac-attctaccagcattctcacagaactcacaatgaaggaaacc 59
||||||||||||||| || || |||||||||||||||||||||||||| |||||||||||
Sbjct: 201 catttctaaagaggaaacaatcctaccagcattctcacagaactcacattgaaggaaacc 260
Query: 60 cagagctgctgatgcaacttaacggggaaaagcacctgctgtcaagac-ggatgagctga 118
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 261 cagagctgctgatgcaacttaacggggaaaagcacctgctgtcaag-ctggatgagctga 319
Query: 119 gctcttgcccttggattcatatggtgggagaaagagaacaaactcctgcaaagttaagct 178
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 320 gctcttgcccttggattcatatggtaggaaaaagagaacaaactcctgcaaagttaagct 379
Query: 179 ctgccctcaacatatacacacacgtgcacacacacgtatataaacacatactcacacata 238
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||
Sbjct: 380 ctgccctcaacatatacacacacgtgcacacacatgtatatacacacatactcacactta 439
Query: 239 catgtggacatgc 251
|||||||||||||
Sbjct: 440 catgtggacatgc 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 652
Length adjustment: 9
Effective length of query: 242
Effective length of database: 643
Effective search space: 155606
Effective search space used: 155606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no149_o05.g1 MSMg01no149_o05.g1 CHROMAT_FILE:
MSMg01no149_o05.g1 PHD_FILE: MSMg01no149_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:18 2005
(321 letters)
>mm_chr9_89766776_89767496
Length = 721
Score = 586 bits (303), Expect = e-172
Identities = 318/325 (97%), Gaps = 4/325 (1%)
Strand = Plus / Minus
Query: 1 ggtcactgagagaccctatattaaaccaagaccaaaaacagggatggcacctgaggaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggtcactgagagaccctatattaaaccaagaccaaaaacagggatggcacctgaggaaca 621
Query: 61 cataaaagttatcttgtggcctacattcatatatacacatgtgcatgtgcaccccctaca 120
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 620 cataaaagttatattgtggcctacactcatatatacacatgtgcatgtgcaccccctaca 561
Query: 121 taaacacataa----acacacacacacacacacacacactccacatgaagaacatggctt 176
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taaacacataaacacacacacacacacacacacacacactccacatgaagaacatggctt 501
Query: 177 cccacgtccaattgcggtcccagccaaatcatcgccaagtggattagaataacaccaact 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cccacgtccaattgcggtcccagccaaatcatcgccaagtggattagaataacaccaact 441
Query: 237 tttgctaccatgtcaactgctgttggttgcgcaattgctgacttttgaagctacttaaaa 296
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttgctaccatggcaactgctgttggttgcgcaattgctgacttttgaagctacttaaaa 381
Query: 297 atgtgcaaaccgttttgcataaagt 321
|||||||||||||||||||||||||
Sbjct: 380 atgtgcaaaccgttttgcataaagt 356
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
