Query= MSMg01no149_o12.b1 MSMg01no149_o12.b1 CHROMAT_FILE:
MSMg01no149_o12.b1 PHD_FILE: MSMg01no149_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:19 2005
(574 letters)
>mm_chr9_59555217_59556189
Length = 973
Score = 1060 bits (548), Expect = 0.0
Identities = 563/570 (98%), Gaps = 5/570 (0%)
Strand = Plus / Minus
Query: 7 gaattcaggtcctcttgcctggacagacaagtactgtgctgactgaggcaccttcccagc 66
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 gaattcaggtcctcatgcctggacagacaagtactgtgctgactgaggcaccttcccagc 777
Query: 67 ccctcaaggtccccttggtagccataag--tatatcccaacaattcccacccttcccagt 124
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 776 ccctcaaggtccccttggtagcc---aggttatatcccaacaattcccacccttcccagt 720
Query: 125 ctggacttatctctgattgggaaggggcctcacctgccatcatctggaggctcctggacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ctggacttatctctgattgggaaggggcctcacctgccatcatctggaggctcctggacc 660
Query: 185 tttcctggtttctccgtgcagggcacatggctcttcagaggtgccatcttcccgtgcatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tttcctggtttctccgtgcagggcacatggctcttcagaggtgccatcttcccgtgcatt 600
Query: 245 tgttggttgctagagggaaatgtgtccatgttagaaagagaaatttgggggcatctttcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tgttggttgctagagggaaatgtgtccatgttagaaagagaaatttgggggcatctttcc 540
Query: 305 ctattagctgcactgtgtccagggcagctgctctgttctctaccctttgatgtacagggt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ctattagctgcactgtgtccagggcagctgctctgttctctaccctttgatgtacagggt 480
Query: 365 agtttaagatgccatcatttggagccacctttcaaatgctgtgcccattaacccagagac 424
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 agtttaagatgtcatcatttggagccacctttcaaatgctgtgcccattaacccagagac 420
Query: 425 cagcattctgagagggaactcatttccccacatctaaacactactctgggtatagtaggc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cagcattctgagagggaactcatttccccacatctaaacactactctgggtatagtaggc 360
Query: 485 ttttctcacctctgccaatctgataggcagaaaaacatcatcttcatttgcatatcatca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttttctcacctctgccaatctgataggcagaaaaacatcatcttcatttgcatatcatca 300
Query: 545 ctgataggtgcctcccacaccacactgcct 574
||||||||||||||||||||||||||||||
Sbjct: 299 ctgataggtgcctcccacaccacactgcct 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 973
Length adjustment: 10
Effective length of query: 564
Effective length of database: 963
Effective search space: 543132
Effective search space used: 543132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_o12.g1 MSMg01no149_o12.g1 CHROMAT_FILE:
MSMg01no149_o12.g1 PHD_FILE: MSMg01no149_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:19 2005
(474 letters)
>mm_chr9_59397829_59398702
Length = 874
Score = 832 bits (430), Expect = 0.0
Identities = 460/470 (97%)
Strand = Plus / Plus
Query: 1 agtcccagccgcccagaccgttttctctccatgttctctaaggcaggaacgccagagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcccagccgcccagaccgttttctctccatgttctctaaggcaggaacgccagagtaa 260
Query: 61 gagtgggtgtttaagatgatgtgcacttgagaccgggaagatggcaaatactttagtgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtgggtgtttaagatgatgtgcacttgagaccgggaagatggcaaatactttagtgct 320
Query: 121 gggaggaaagaggcagtggggagaaatcacttgaagataatttatatgagaggagcctga 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaggaaagaggcagtgggaagaaatcacttgaagataatttatatgagaggagcctga 380
Query: 181 ggggaagtccagaatacaggcgaagggaaataaatgtcttccatagaggaaagggagaag 240
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggaggtccagaatacaggcaaagggaaataaatgtcttccatagaggaaagggagaag 440
Query: 241 aaggtaaagtcagatgcagcgttgcaggcgttctgcgagactgggaaaggaaaggaacgt 300
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggtaaagtcaggtgtagcgttgcaggcgttctgcgagactgggaaaggaaaggaacgt 500
Query: 301 ggaatggagctctcaagctgctgaagtaagggaggtggaaccaggcatagtcttgaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaatggagctctcaagctgctgaagtaagggaggtggaaccaggcatagtcttgaggaa 560
Query: 361 ggtggcacaggcttgaagtagatgttccagagaatagaaggggacaatagagggcatagg 420
|||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct: 561 ggtggcacaggcttgaagtagatgttaaagagaatagaagggggcaatagagggtatagg 620
Query: 421 agacaactttcttgggtttttgttgttgtttgatgtatgtgtggtatgtg 470
||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 agacaactttcttgggtttttgttgttgtttgatgtatgtgtggtctgtg 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
