Query= MSMg01no150_a09.b1 MSMg01no150_a09.b1 CHROMAT_FILE:
MSMg01no150_a09.b1 PHD_FILE: MSMg01no150_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:28 2005
(391 letters)
>mm_chr9_111560545_111561335
Length = 791
Score = 679 bits (351), Expect = 0.0
Identities = 381/391 (97%)
Strand = Plus / Plus
Query: 1 agacttgggttttttatcttcatttgctgctaagcaaatcaatgggttcccaagaacaca 60
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacttgggttttccatctttatttgctgctaagcaaatcaatgggttcccaagaacaca 260
Query: 61 aatatgcttgattaattgcattgacataagcaatacatcaggtcattcaggaagtgtagt 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 aatatgcttgattaattgcattgacataagcaatacatcaggtcattcaagaagtgtagt 320
Query: 121 catcacctgtaagattttcccccaaagcaaaactacataaatatgtacataaatgaagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcacctgtaagattttcccccaaagcaaaactacataaatatgtacataaatgaagac 380
Query: 181 atcacggaatgcagcaacatcgtaagtggcaaaagcctccagggagctggctttctctaa 240
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcacggagtgcagcaacatcgcaagtggcaaaagcctccagggagctggctttctctaa 440
Query: 241 cagcccagctgcctgggtctcgatcctggctttgcttctgagcagctctattaacttcgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcccagctgcctgggtctcgatcctggctttgcttctgagcagctctattaacttcgt 500
Query: 301 ttgaaatggaaaatgtaggctgctgagctaattcgaagtaataaccccacaaagccctta 360
||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||
Sbjct: 501 ttgaaatggaaaatgtaggctgctgtgctaattcgaagtaataatcccataaagccctta 560
Query: 361 gcacagatcctgggacagagtgtcagtgcaa 391
|||||||| ||||||||||||||||||||||
Sbjct: 561 gcacagatactgggacagagtgtcagtgcaa 591
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space: 298724
Effective search space used: 298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_a09.g1 MSMg01no150_a09.g1 CHROMAT_FILE:
MSMg01no150_a09.g1 PHD_FILE: MSMg01no150_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:29 2005
(618 letters)
>mm_chr9_111719604_111720621
Length = 1018
Score = 1056 bits (546), Expect = 0.0
Identities = 592/620 (95%), Gaps = 22/620 (3%)
Strand = Plus / Minus
Query: 1 ctagatatacacagcactataggaaaggagccaaatgaagtttctatgctaagaatggat 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ctagataaacacagcactataggaaaggagccaaatgaagtttctatgctaagaatggat 736
Query: 61 tctcccttggaaggcagaggcaggcagattactgagttcgaggccagcctggtctacaga 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 735 tctcccttggaaggcagaggcaggcagattactgagttcgagaccagcctggtctacaga 676
Query: 121 gtgagctccaggtcagccaaggctacacagagaaaccctgtctcaggaaacaaaac-aaa 179
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 675 gtgagctccaggtcagccaaggctacacagagaaaccctgtctcgggaaacaaaacaaaa 616
Query: 180 caaacaagcaaacaaaaagaatggattctcccttccctaccaccaggaggcagccttctg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 caaacaagcaaacaaaaagaatggattctcccttccctaccaccaggaggcagccttctg 556
Query: 240 ggtctcctgtaactcaggtgctgaggagccttaaaggggcagcatctgacagataaattg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ggtctcctgtaactcaggtgctgaggagccttaaaggggcagcatctgacagataaattg 496
Query: 300 accttgagagaagtctcgacctcagggggaatacttcgccatattgggttttgtcaggga 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 495 accttgagagaagtctcgacctcagggggaatacctcgccatattgggttttgtcaggga 436
Query: 360 aaaataaagttgatctaggaggtttctatttctgaaattttatctatctatctatctatc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaaataaagttgatctaggaggtttctatttctgaaattttatctatctatctatctatc 376
Query: 420 tatctatctatctatctatctatctatctatctatctatcgatctatctacttatttgtc 479
|||||||||||||||||||||||||||||| ||||||||||
Sbjct: 375 tatctatctatctatctatctatctatcta--------------------cttatttgtc 336
Query: 480 ttaactgtgatttcagtttcttccaatagaattgagttctttattagtttattttggagt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttaactgtgatttcagtttcttccaatagaattgagttctttattagtttattttggagt 276
Query: 540 ttgtgtagcacattagtcgctttctttgttgctatgacaataacctgacccccccccccc 599
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 275 ttgtgtagcacattagtcgctttctttgttgctataacaataacctgaccccccccccca 216
Query: 600 aa-tcaccttaagggactgt 618
|| |||||||||||||||||
Sbjct: 215 aaatcaccttaagggactgt 196
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
