BAC Information

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BAC

Clone NameMSMg01-150D11
Chromosome9 (Build37)
Map Location 72,008,912 - 72,009,373
singlet/doubletsinglet
Overlap genenone
Upstream geneAqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959
Downstream geneEG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150D11.T7 (MSMg01no150_d11.b1)MSMg01-150D11.TJ (MSMg01no150_d11.g1)
ACCAG352715AG352716
length714712
length of high quality
(start - end)
382 (331 - 712)542 (78 - 619)
definitionCHROMAT_FILE: MSMg01no150_d11.b1 PHD_FILE: MSMg01no150_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:43 2005CHROMAT_FILE: MSMg01no150_d11.g1 PHD_FILE: MSMg01no150_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGC
GGAATTCCTTAATGTGGCAACCTCAAGAACTAAGTGTTAACTAACAGAGA
CGACCGCTAAGGAGAGCAGCAAGGATGTAAGATATCCCTGTCGTACTATG
AATGAGGTAAAGATGATGACTTCAGTTTGAGACATATTTTAAGTGCCTTT
GAAACAAGAAAGACCTCTTTTCTATTGCCTCTCAAACCATAAAGTGGAAA
AGAGGAAGAAATGCTGAGGATACTGACATTTCTTAAAGAAGATGGTTGTG
GTTTGGATATACCTGGCCCAGGTATTGTTACTATTTGGAGGAAGTGTGTC
ACTGTGGGCATGGGCTTTAAGACCCTGTCCTGGCTGCCTAGAAGCTAGTC
TTCTCCTGCTTGCCTTTGGAACAGATGTAGAACTCTTGGCTCCTACTCCA
GCACTGTGTCTGCATGGATGTTACCATCCTTCCTATCATGATGATAATGG
TCTGAACGATCCTCTAAGCCAGTCCCAATTAAATGTTGTCCCTCATAAGA
ATTCTTGGTCATAGTGTCTCTTCACAGGAATGAAAACCCTAACTAAGACA
ATGGTCAAAGAAACTCTGTCCCTCCTATAGCTCTTATCATTATAATTTAA
AAAAAAAAAAAACAAGATAGCCACACTAAAGTTCAGAAGTTGGGTGTACA
AGCAGAGTCAGAGN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTCACTCCCATTCTCG
GGGTGTAATAGTGGGGTGATGGGCAAGCAACGAACCAGGAGCTGTCACGC
CATATCAGGTGCTGAAACGTCACGCTGCGGGTTATAAAAGCAGCGCCATT
TTCCCGGTTTGGGATCTTCCTGAGAAGCAAGCAATAAAGCTTTTGCCACG
GAAGATTCTGGTTTGTTGCGTCTTTCTTGCCGGTCGAGCGGGACGCAATA
CTTAAATGCTGAGCCATCTCTCCGATCTTGATAAGCTATTTAATTAATTT
ATTTATAGAAACACAAGGAGCCAATTCAGTAGGAAAGGGTTATTGTCCAC
ACCTAATAGTACTAGGACAAGGAGGAAACGTAGTGCCTTAAATTAGAGAG
AGTTTGATAGGCTGTGTTAGATTTGGTTACACAAACATTTATGTATGGAA
TAGACAGTCGGAACAAGTGACAGATATGTGTGGTTTGGATCTTCAATGTG
TCCCGAGGACACACACACTGCAGGCTCAGTTCCCAGCTGATGGCACATCT
AGAGGGTAACAGACTTTCAAGGAGGTAGCACATAGTGGAGAAAGGTTGGA
CCGCTGCCTTTGATTGTGGCTTTACTATTTAATATTTCAAGACCGGGTCT
AACATATCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_d11.g1 MSMg01no150_d11.g1 CHROMAT_FILE:
MSMg01no150_d11.g1 PHD_FILE: MSMg01no150_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:43 2005
         (542 letters)



>mm_chr9_72008432_72009373
          Length = 942

 Score =  862 bits (446), Expect = 0.0
 Identities = 458/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  ggtgctgaaacgtcacgctgcgggttataaaagcagcgccattttcccggtttgggatct 140
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 942 ggtgctgaaacgtcacgctgcgggttataaaagtagcgccattttcccggtttgggatct 883

                                                                       
Query: 141 tcctgagaagcaagcaataaagcttttgccacggaagattctggtttgttgcgtctttct 200
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 882 tcctgagaagcaagcaataaagcttttgccgcggaagattctggtttgttgcgtctttct 823

                                                                       
Query: 201 tgccggtcgagcgggacgcaatacttaaatgctgagccatctctccgatcttgataagct 260
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 tgccggtcgagcgggatgcaatacttaaatgctgagccatctctccgatcttgataagct 763

                                                                       
Query: 261 atttaattaatttatttatagaaacacaaggagccaattcagtaggaaagggttattgtc 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 atttaattaatttatttatagaaacacaaggagccaattcagtaggaaagggttattgtc 703

                                                                       
Query: 321 cacacctaatagtactaggacaaggaggaaacgtagtgccttaaattagagagagtttga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 cacacctaatagtactaggacaaggaggaaacgtagtgccttaaattagagagagtttga 643

                                                                       
Query: 381 taggctgtgttagatttggttacacaaacatttatgtatggaatagacagtcggaacaag 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 taggctgtgttagatttggttacacaaacatttatgtatggaatagacagtcggaacaag 583

                                                                       
Query: 441 tgacagatatgtgtggtttggatcttcaatgtgtcccgaggacacacacactgcaggctc 500
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 582 tgacagatatgtgtggtttggatcttcaatgtgtcccaaggacacacacactgcaggctc 523

                                                     
Query: 501 agttcccagctgatggcacatctagagggtaacagactttca 542
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agttcccagctgatggcacatctagagggtaacagactttca 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)