BAC Information

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BAC

Clone NameMSMg01-150K08
Chromosome9 (Build37)
Map Location 118,196,354 - 118,196,681
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
Downstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150K08.T7 (MSMg01no150_k08.b1)MSMg01-150K08.TJ (MSMg01no150_k08.g1)
ACCAG353025AG353026
length817754
length of high quality
(start - end)
37 (77 - 113)328 (80 - 407)
definitionCHROMAT_FILE: MSMg01no150_k08.b1 PHD_FILE: MSMg01no150_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:15 2005CHROMAT_FILE: MSMg01no150_k08.g1 PHD_FILE: MSMg01no150_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCACCCATCCGC
GGAATTCCAGGACTTTCCCCGCTACACCGAGAAACCCTGTCCCAAGGAAC
CAAAAGAAACTTTCATATTTCTGCGTGCATGTATGTGCACTATGTATATA
TGCATGCATATGTATATGATATGTAAGCATGTGTGATGTGACGAGGAGCC
TCCCCTCCCCCCCCCCCCTTCCCTCCCCCCCCCCTCCCCCCCCCCCTCCC
TCCCCTTTTCCCCCCCCCCCCTCCCCCTCTCCCCCCCTTCCCTTTTTCCT
TTCCCCCCTTTCCCCCCCCACCCATTTTTTCTTCTTCTCCCCCCCCCCCT
CCCCCCTCCCCCTCCCCCCTCCCTCCCCTTCCCCCCCCCCTTCCCCCCCC
CCCCCCCCCCCCCCCCCCTTCCCCCCTTCCCCTTACCCCCACACCCTCCC
CCTTCCTCCCCCCCTTCCTCCCCCCCTCCCCCCCCCTCCCCCCCCCCCCT
TCTCCCCCCCCTCCCTCCCCCCCCTTTTCCCCCCTCCCCCCACCCCCTCC
CCTCTTCCCCCCCCCCCCTCCCCTCCCCCCCTCTCTCCCCCCCTCCCCCC
TTCTCCCCCTCCCTCCTCCCTCCTTTCCCCCCCCCCCCCCTTTTCCCCCT
TCCCACCCCTCCTTTTCCTTCCCTCTCCCCACCTACCCTCCACTCCTCCC
CCCCCCCCCCTCCCCCTCCTTCTCCCCCCTCTCCCTCTCTTTCTTCCCCC
CTCCCCCCTTCCCCCCCTCCTTCCCTTTTATCTCCCCCCTCCTCTCCCCT
CTCCTCCCCCCCCCTCG
ATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAGAAAAACTCCATTTTTTAAAGGTACA
GACTTTTCCTGATGGGTAGCAGGAGAGAAGATCAATATGAACATTCTCTG
TTTCTGTTTCTGTGGGGACCTTGTGGCAAGAGCTGGGAGTGTCAAGGAAG
TAAATTCTACCAGTGACCTGGGGTCCGCTGGCTGAGAACCTGACCCAGCC
AGACACACTGGGCTCAGCTTTGGTATGCCAGGGGCAGAGAGATTGATCTT
GAGACAGCCCCCGGGTGCTGTTTTAAGCTCCCCTCCCCCACTGTCACCAC
CATGTGACAGTTTGAGTTCTTAAGGAGCTCAGTGCTTACACATGAAAGTA
TTGATGCGGAGCCCCCCCCCACTGACGGGTCGAAGCTGCTTTGCTGCATG
CCTGCCTATTCAAACCTGGCTTCTTCTCTCTTACTACATACACGTGTGTG
TTGCCCCGCGCGCGCGTGTGTCCCCCCCCCCCCTTTTTTCCCCCTTTTCT
ACCCCTCTTTTTTTCTTTTTCCCCCCCCCTTCCCTCTTTATTTTTTTCCT
TATCCCCCCCTCTTCTCTTTTACCCCGTTTTTCTCCGTTTTCCCCCCCCT
TCCGCTTTCGTTTTCTTACCCCCTTTTTCCTTACTTCTCTGCCCCCCACC
TTTTTTTCCCTCTTCTTTGACCATCCCCTCATTTTTTCTGATCCTCTTAA
CCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_k08.g1 MSMg01no150_k08.g1 CHROMAT_FILE:
MSMg01no150_k08.g1 PHD_FILE: MSMg01no150_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:15 2005
         (328 letters)



>mm_chr9_118196154_118196881
          Length = 728

 Score =  534 bits (276), Expect = e-156
 Identities = 315/328 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   actccattttttaaaggtacagacttttcctgatgggtagcaggagagaagatcaatatg 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 201 actccattttttaaaggtacagactttccctgatgggtagcaggagagaagatcaatgtg 260

                                                                       
Query: 61  aacattctctgtttctgtttctgtggggaccttgtggcaagagctgggagtgtcaaggaa 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagattctctgtttctgtttctgtggggaccttgtggcaagagctgggagtgtcaaggaa 320

                                                                       
Query: 121 gtaaattctaccagtgacctggggtccgctggctgagaacctgacccagccagacacact 180
           || ||||||||||||||||||||| ||||||||||||||||  || ||||| ||||||||
Sbjct: 321 gtgaattctaccagtgacctgggggccgctggctgagaacccaacgcagcctgacacact 380

                                                                       
Query: 181 gggctcagctttggtatgccaggggcagagagattgatcttgagacagcccccgggtgct 240
           |||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gggctcggctttgggatgtcaggggcagagagattgatcttgagacagccctcgggtgct 440

                                                                       
Query: 241 gttttaagctcccctcccccactgtcaccaccatgtgacagtttgagttcttaaggagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttttaagctcccctcccccactgtcaccaccatgtgacagtttgagttcttaaggagct 500

                                       
Query: 301 cagtgcttacacatgaaagtattgatgc 328
           ||||||||||||||||||||||||||||
Sbjct: 501 cagtgcttacacatgaaagtattgatgc 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)