BAC Information

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BAC

Clone NameMSMg01-150M12
Chromosome9 (Build37)
Map Location 110,623,737 - 110,623,889
singlet/doubletsinglet
Overlap genenone
Upstream geneEG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12
Downstream genePthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150M12.T7 (MSMg01no150_m12.b1)MSMg01-150M12.TJ (MSMg01no150_m12.g1)
ACCAG353127AG353128
length714687
length of high quality
(start - end)
242 (77 - 318)153 (131 - 283)
definitionCHROMAT_FILE: MSMg01no150_m12.b1 PHD_FILE: MSMg01no150_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:25 2005CHROMAT_FILE: MSMg01no150_m12.g1 PHD_FILE: MSMg01no150_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXGAATCACAATCCAAAGAGGATCCG
CGGAATTCCTATTTGACACACCCCAGTAGTTTCACAATAATGTGTCTATT
AAGATCTTCTTAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTC
GGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
AAGTGAGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAA
AAACCAAAAAAAAAAAGTCATGCAGCGCCGGGCGGTGGTGGCACACGCCT
TTAATCCTAGCACTTGGGATTTTTATGCAGGCAGATTTCTGAGTTCGAGG
CCAGCCTGGTCTACACAGGGAGTTCCAGGACAGCCAGGGCTACACAGAGA
AACCCTGTCTCGAACCACAACCCCAACACAAAAGAAAAATCGACCCCGAA
CAAACCACAACGATCTTAACTTTAGGCTACATTTCTATTTATATTTACAA
TAAAATATTTAGCTTTTACATCTCCTACTTCGCATTTATCTGACTTCTTA
CCATCCCGGATGCCTTACGCACCATTCTCCTTCTTCCCCACTTGTTTGTT
TCCCCGCTGCTTTGCTGAGAATCTTCTTTCCCTACTGCCACCCGATACCT
CGTTACCTATTGCCGCTGCGCCTCCTAACTTTTCTATCCCCCTCCACCCT
TTCTTCCCGCCTGG
AAAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAGCCGAGGGTGCAA
GGACAGTGGGAGTTTAGGCCATAAGGGTCAGCTGGAGTGCAGGCCTGCAA
GGCTAGGCCTGTACATTCACTGAATAGCCAGAATGTTTGCTCAGGATCCC
CACCCGACTCCCCATCCTCTGGGCCGTGCTGAACCATTTATGGGCTCTGA
AAAGGCCTGACGCTCAGGCCGCATGCCTCTACGTGGGCTGTTTGGCTCAC
TGCGCAGTCCAGCTTTGTAGTGTTTTTTGGGTCTGTCCCTCCCTTTCTCA
GTTCATACCCCCTTGCTTTTCCTCCAGTTCCTCCTCCCTCCCCACCCCCA
AAATCCCCCAAACCCCCTTTTATCCCCCCCCCCCACCCCCTTTCCCCCCC
CCTTTTATTCCCCCCCCCCCTTCCCCCCCCCCCCCTTTTTCCCCCTTCTT
CCCCCCTTTCCCTTTCCCCCCCCCTCCCCCTTTTTTCTTTTCTTTCCCCC
CCCTTCCTCTTTTTCTTTTTTTTTCCCCCTCTCCCCCCCCCCCCCTCCCT
CTTTTCCCCCCCTCCCCTCCTTCCTTCCCCCCCCTTTTTTCCCCTTCCTC
TTCTCCCCCCCCCCTCTTTCCTCTTCCCCCCTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_m12.g1 MSMg01no150_m12.g1 CHROMAT_FILE:
MSMg01no150_m12.g1 PHD_FILE: MSMg01no150_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:26 2005
         (153 letters)



>mm_chr9_110623537_110624089
          Length = 553

 Score =  288 bits (149), Expect = 9e-83
 Identities = 152/153 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctggagtgcaggcctgcaaggctaggcctgtacattcactgaatagccagaatgtttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gctggagtgcaggcctgcaaggctaggcctgtacattcactgaatagccagaatgtttgc 294

                                                                       
Query: 61  tcaggatccccacccgactccccatcctctgggccgtgctgaaccatttatgggctctga 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 293 tcaggatccccacccgactccccatcctctgggccatgctgaaccatttatgggctctga 234

                                            
Query: 121 aaaggcctgacgctcaggccgcatgcctctacg 153
           |||||||||||||||||||||||||||||||||
Sbjct: 233 aaaggcctgacgctcaggccgcatgcctctacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)