BAC Information

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BAC

Clone NameMSMg01-150M15
Chromosome9 (Build37)
Map Location 66,790,049 - 66,790,365
singlet/doubletsinglet
Overlap genenone
Upstream geneCsnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b
Downstream geneRps27l, Lactb, Tpm1, Tln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150M15.T7 (MSMg01no150_m15.b1)MSMg01-150M15.TJ (MSMg01no150_m15.g1)
ACCAG353133AG353134
length731796
length of high quality
(start - end)
493 (34 - 526)318 (78 - 395)
definitionCHROMAT_FILE: MSMg01no150_m15.b1 PHD_FILE: MSMg01no150_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:26 2005CHROMAT_FILE: MSMg01no150_m15.g1 PHD_FILE: MSMg01no150_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCACTC
ACAATGACACTGACTTAGGGTTTTACTGCTGTGAACAGACACTACAACCA
AGGCAACTGTTACAAGGATAACATTTAATTGAGGCTGGTTTACAGGTTCA
GAGGCTCAGTCCATTATCACCAAGGTGGGAATATGGCAACGTCCAGACAG
GCATGGTGCAGGAGGAGCTGAGAGTTCTACATCTTCTTCTGAAGGCTGCT
AGCAGAATACTGGCTTCCAGGCAGCTAGGATAAAGGTCTTACAGCCCACA
CTCACAGTGACACTTCCACTCAAACACTGCCACACCTAATCCCATAGGGC
CACAACTTCTAATAGTGCTACTCCCTGGGCTGAACATATACAAATCATCA
CAGAGACTCAAGTTTAATGACACTAAGGGGTGTAACTCATTTGGCAGAGT
GCTTTCCCAAACTGCCAAAAGTCTATAAACCAGTGTGGTGTTACAGGTCT
GTAATCTCAGCACTCAGAGGGTGGAGACAGAAGAATCAGAGTTCAAGACC
ATCCTCAGTTACATAGTTGGTGGTTAGCCTGGGCTACCTGTCTCAAAAAA
AATAAAGTTGAACGTTAATATTTTATACCAGCCATAGAATCATTGTTTCC
CCAGCTTTGTTATCTTCGCCCCAGATTCTTTGAGCAATCTTGTTCCGGTA
TATCTTTCTGACTTCCCACTCCGATGTATGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAAGTCTAGGTTAAGGCTTCT
TATTTGGGGATGTTTACACACATCGCTGGGATGTGTTGAGATTCAGATTC
TGGCTCTGAAGATCCTGGAAACTGCCCTAAGAGTCTCTGTTTCTAAATGG
TTAGTAAGTTGATGGGATGCTGCTGGTCTGCAGAGTGCAAAGGCCTGAAT
GGCTAAGCCCTAACAATGGTTAGCATCCTCCTGTACATTTCAAGCATAGA
ACAGGGAGAGCCTCAGGCCTGTCACACTCTGGGGTTCCAGGGGCAGGGTT
GACATTGTTAACTGACTAGATTAAGACTGGGCAAGGACTGAAGAAGTGCA
CTGTGGCGGTGTCCCCCCCCTATTTCTTTAATATTCATTTTTTACACTTT
CTTTCCTCTCCTCTTGTCCCCTTCTCCCCCCTCCCCTTCTTTTTTATCTC
TTCCTCCCCCCCTTCTCTTCCTCTTTTCCTCTCTTTCCCCCCCCCCTCCC
CCCTTCTCTTTCCCCTTCCCCCCTTTTTTTCCCCTTCCCCCACTCTTTCC
CTCCCCCCCTCCTTTTCTTCCCCCTTTTTCCTCTCCTCTCTCCCCCTCGC
CCCTCTACTTCCCTCCCCTTCATCTCCCTCTCCCCCTACTTCTTTCTCTT
CCCCCTCCTTTTAATTTATGTTTGTTTCTTATTCCCCTTGTTTTATGACT
TTTCTTCTCTCTTCTCCTCCCTCTCTCCCCCTTATCCTCCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_m15.g1 MSMg01no150_m15.g1 CHROMAT_FILE:
MSMg01no150_m15.g1 PHD_FILE: MSMg01no150_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:26 2005
         (318 letters)



>mm_chr9_66789849_66790565
          Length = 717

 Score =  576 bits (298), Expect = e-169
 Identities = 313/318 (98%), Gaps = 1/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaagtctaggttaaggcttcttatttggggatgtttacacacatcgctgggatgtgtt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |
Sbjct: 201 tgtaagtctag-ttaaggcttcttatttggggatgtttacacacatctctggaatgtgat 259

                                                                       
Query: 61  gagattcagattctggctctgaagatcctggaaactgccctaagagtctctgtttctaaa 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 260 gagattcagattctggctctgaagatcctcgaaactgccctaagagtctctgtttctaaa 319

                                                                       
Query: 121 tggttagtaagttgatgggatgctgctggtctgcagagtgcaaaggcctgaatggctaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tggttagtaagttgatgggatgctgctggtctgcagagtgcaaaggcctgaatggctaag 379

                                                                       
Query: 181 ccctaacaatggttagcatcctcctgtacatttcaagcatagaacagggagagcctcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccctaacaatggttagcatcctcctgtacatttcaagcatagaacagggagagcctcagg 439

                                                                       
Query: 241 cctgtcacactctggggttccaggggcagggttgacattgttaactgactagattaagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctgtcacactctggggttccaggggcagggttgacattgttaactgactagattaagac 499

                             
Query: 301 tgggcaaggactgaagaa 318
           ||||||||||||||||||
Sbjct: 500 tgggcaaggactgaagaa 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)