BAC Information

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BAC

Clone NameMSMg01-151B19
Chromosome9 (Build37)
Map Location 55,446,758 - 55,447,094
singlet/doubletsinglet
Overlap geneZfp291
Upstream geneIdh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2
Downstream geneLOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151B19.T7 (MSMg01no151_b19.b1)MSMg01-151B19.TJ (MSMg01no151_b19.g1)
ACCAG353367AG353368
length714723
length of high quality
(start - end)
545 (50 - 594)341 (80 - 420)
definitionCHROMAT_FILE: MSMg01no151_b19.b1 PHD_FILE: MSMg01no151_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:50 2005CHROMAT_FILE: MSMg01no151_b19.g1 PHD_FILE: MSMg01no151_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGTTTTAGCTCTATACCCCATTTTTTATTTTGGCCATGAG
CCTAGCCTTAACGGCTAAGCCATCTTTGCAGCCCATACCCCAGTTTTTAA
TAGGATTATTTGGTCCTCTGGAGTCTTAACTTCTTGAGTTCTTTATATAT
TTTGCATATTAGCCCTCTACCAGATGTAGGGTTGGTATAGATCTTTTCCC
AATCTGTAGGTTGCCATTTTTTCCTATTGACAGTGTCCTTTGCCTTACAG
AGCTTTTCAATTTTATGAGGTCCCATTTGTCAGTTGTTTATCTTAGAGCC
TGAGCCATTGGTGTTCTGTCAAGGAAAATTTTCCCCTGTGCTAATGTGTT
CAAGCCTCTTTCCCATTCCCCCCCCCATAAGATTCAACATTTCTGGTTTT
ATGTGGAGGTCCTTAATCCACTTGAACTTGAACTTTGTACAAGGAGATAA
GGGTGGATCAATTTGCATTCTTCTATATGCTGACTGCCACGCAAACCACC
ACCATTTGTTGAATATGTTGTCATTTTTCCACTGGATGTTTTGGCTTCTT
TGCCAAAGATCAGGTGACCATAGATGTGTGTTTTTATTTCTGGCTCTTTA
GTTCTACTTCCTCTGATTTACATGCATGTCTCTGTACTAATACTTTTGTG
TTTTTATTCTCTTG
NACGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAATAAAGCAAAACCACA
GGTCCTACTTCTTAGACTAACTTGTGAGCTAGCACAGAAATTCTAATTCA
TGTAACAAAATGCTTGACTGGGTCACTCACTACAGTTTATAGTTTAGAAA
TATAGACTTCTTATGAAGACATGGGGACAGCACAGGAGGCCTGTGATGTA
AGCATGTGAATGAGAATGACTAACTGGTAGAGTGCTCCCTGCCCCGTCCT
TAGTGCTCAGGGAATGCTGGGAGAGTGAAAAAATGACAAGTAGGGATCAT
TTTCCCCCATTTTGAGAGTAGCAGATTACACAAACTCTACTAGAATTTCC
CAGGTAAATTGAATCACAAAAACACCCCAACCTATATTTATGTCCAAAAC
AATCTGCTCTTGCAGTGAGTCCTGCTATTAGAAATTTGCTAAGCCACTCA
AGTTGAACAAAGAAACTATATTGGGGAATTAAGAATTTTTAGAAACCATC
AAGAATAAATTACTACCAACTACTTAATCTAATTTGGAGACTATATCATT
TACTAATCAAAAGTGACAAATCAGAAGCCTGAAGGTTCATCTAGATTCTT
CTTAGCTCCCATATTAAGCTCCTTGCTATTTGATTTATTCTACCTCATCT
TACTGCCTTTGCTCTTCTCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_b19.g1 MSMg01no151_b19.g1 CHROMAT_FILE:
MSMg01no151_b19.g1 PHD_FILE: MSMg01no151_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:50 2005
         (341 letters)



>mm_chr9_55446558_55447294
          Length = 737

 Score =  625 bits (323), Expect = 0.0
 Identities = 335/341 (98%), Gaps = 4/341 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacaataaagcaaaaccacaggtcctacttcttagactaacttgtgagctagcacagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacaataaagcaaaaccacaggtcctacttcttagactaacttgtgagctagcacagaa 260

                                                                       
Query: 61  attctaattcatgtaacaaaatgcttgactgggtcactcactacagtttatagtttagaa 120
           ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||
Sbjct: 261 attctaattcatgtaacaaaatgcttgactgggtcact----acagtttatagtttagaa 316

                                                                       
Query: 121 atatagacttcttatgaagacatggggacagcacaggaggcctgtgatgtaagcatgtga 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atatagacttcctatgaagacatggggacagcacaggaggcctgtgatgtaagcatgtga 376

                                                                       
Query: 181 atgagaatgactaactggtagagtgctccctgccccgtccttagtgctcagggaatgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 377 atgagaatgactaactggtagagtgctccctgccccgtccttagtgctcagggaatgcta 436

                                                                       
Query: 241 ggagagtgaaaaaatgacaagtagggatcattttcccccattttgagagtagcagattac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggagagtgaaaaaatgacaagtagggatcattttcccccattttgagagtagcagattac 496

                                                    
Query: 301 acaaactctactagaatttcccaggtaaattgaatcacaaa 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acaaactctactagaatttcccaggtaaattgaatcacaaa 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 737
Length adjustment: 9
Effective length of query: 332
Effective length of database: 728
Effective search space:   241696
Effective search space used:   241696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)