XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCTAATATCCTCTGATCAGTTAGAACTGCCTAAGTCGCACCATCAAAA
TTATAACCTCACTTTCCCATCTCCAGTCTTACCAACTTTATAGCATTTTC
TACTACCTGATAAACAGTACACTTACTGAGTAGTCAACCATCTGCTCTCA
CCAGCAGATGTTAAAGCCACATAAAAAAGAAGTTTTGTTCTACAGTATAT
TTTCAGTCATCAATATCTAGCTCATTACAGACAATTAACATATCCATCCA
AATGAGTTGATACCACATATTTTGCCAATGAAAAAAAGCCCATAGAAGTC
AAGCAAGCTATTCATAGTGGAACTGCATGGTTACAGTGCCAGGACGGGCA
AAAATGAGATACATCCCCACCCACCGGTAGCTGGATAAGGCTGTAAACTA
CAGCAACTGAGAATTGTTCGATTTAGTCAATCAGAGAAAGTCTGTGGCAA
TATGTCTACTCTCATCACCACTGTTTCATGAGTTGTGTTAAATTAACATT
GAAATAAGAGTTACATTGTAAGCATAGTTGTTAACACTGAATCACGTCTT
GCTCACTCAAAGCTGATCATTAATCAGGGTTACTTAGTATAAGAGTTCTT
AATCTTGATGTCATGTTAGTTGAGGAATGATATTTAGGGGAATTATTTAN
AAGNTTCTNCGCTGTTTACTTTTTTGCTTCTCTCTTTATTTTG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGTCTATTCTTGGGTTTATTGCATCTTG
TTCCATCTCTATGGCAAACTCTAATTCTTTAACATGGGCACACTTTTCAG
AGAACACATGTTGTTATAGGTGCCACATGAAGATAATGCCTTACCCAGGT
AAAGTATTTCTATATGAGAAAGCCAGAGGCACCAGGGAAACAATAGAATG
TGTGTACATGTATATGTGTGTTTGTGTATCTGTGTTTATGAAGTATGTAT
GTATATATCTGCTGTATAGCTGAAATAGTTATCATAGCTATACAGAAATA
TAGGTAAGGTTTTTAAAAATATTTGGGAGAACAATTTTAAATAATTTCAC
CAAAACTATTGTTGCCCACCCCGCGAATTTATATGACAAATCAAATAATA
TCATTAAGTGAAACTCAACAGTTATCAATATTAAAAACAGCTATCTCTTT
ATGCCATTTTTGATTTAAGGTACAACAATGACATATTTTAAAATTTTGTG
TTTAGAGAAAGTTAATCATGCTAAATTTTGTGATGTACACACAGACAAAA
AGCATAAATATGGCTAATTACTAACAGACAGCANATAAAACTAAGGATGA
ATATTGGCTATGATGTTTTATCTTACGTATAATAGACAATAAATATCAGC
CATAATCTTTAAAAATAATTCTAACAACTAAAGCACCCATTACAAC

Query= MSMg01no151_h24.b1 MSMg01no151_h24.b1 CHROMAT_FILE:
MSMg01no151_h24.b1 PHD_FILE: MSMg01no151_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:19 2005
         (377 letters)



>mm_chr9_17603343_17604119
          Length = 777

 Score =  661 bits (342), Expect = 0.0
 Identities = 363/370 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttctaatatcctctgatcagttagaactgcctaagtcgcaccatcaaaattat 63
           ||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttctaataacatctaatcagttagaactgcctaagtcgcaccatcaaaattat 263

                                                                       
Query: 64  aacctcactttcccatctccagtcttaccaactttatagcattttctactacctgataaa 123
           ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 264 aacctcactttgccatctccagtcttaccaattttatagcattttctactacctgataaa 323

                                                                       
Query: 124 cagtacacttactgagtagtcaaccatctgctctcaccagcagatgttaaagccacataa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagtacacttactgagtagtcaaccatctgctctcaccagcagatgttaaagccacataa 383

                                                                       
Query: 184 aaaagaagttttgttctacagtatattttcagtcatcaatatctagctcattacagacaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaagaagttttgttctacagtatattttcagtcatcaatatctagctcattacagacaa 443

                                                                       
Query: 244 ttaacatatccatccaaatgagttgataccacatattttgccaatgaaaaaaagcccata 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 444 ttaacatatccatccaaatgagttgataccacatattttgccaatgaaaaaaggtccata 503

                                                                       
Query: 304 gaagtcaagcaagctattcatagtggaactgcatggttacagtgccaggacgggcaaaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaagtcaagcaagctattcatagtggaactgcatggttacagtgccaggacgggcaaaaa 563

                     
Query: 364 tgagatacat 373
           ||||||||||
Sbjct: 564 tgagatacat 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no151_h24.g1 MSMg01no151_h24.g1 CHROMAT_FILE:
MSMg01no151_h24.g1 PHD_FILE: MSMg01no151_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:19 2005
         (343 letters)



>mm_chr9_17710971_17711713
          Length = 743

 Score =  663 bits (343), Expect = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtctattcttgggtttattgcatcttgttccatctctatggcaaactctaattcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcagtctattcttgggtttattgcatcttgttccatctctatggcaaactctaattcttt 318

                                                                       
Query: 61  aacatgggcacacttttcagagaacacatgttgttataggtgccacatgaagataatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aacatgggcacacttttcagagaacacatgttgttataggtgccacatgaagataatgcc 258

                                                                       
Query: 121 ttacccaggtaaagtatttctatatgagaaagccagaggcaccagggaaacaatagaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttacccaggtaaagtatttctatatgagaaagccagaggcaccagggaaacaatagaatg 198

                                                                       
Query: 181 tgtgtacatgtatatgtgtgtttgtgtatctgtgtttatgaagtatgtatgtatatatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tgtgtacatgtatatgtgtgtttgtgtatctgtgtttatgaagtatgtatgtatatatct 138

                                                                       
Query: 241 gctgtatagctgaaatagttatcatagctatacagaaatataggtaaggtttttaaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gctgtatagctgaaatagttatcatagctatacagaaatataggtaaggtttttaaaaat 78

                                                      
Query: 301 atttgggagaacaattttaaataatttcaccaaaactattgtt 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  atttgggagaacaattttaaataatttcaccaaaactattgtt 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)