BAC Information

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BAC

Clone NameMSMg01-151N05
Chromosome9 (Build37)
Map Location 119,524,848 - 119,639,700
singlet/doubletdoublet
Overlap geneScn10a
Upstream geneItga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a
Downstream geneScn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151N05.T7 (MSMg01no151_n05.b1)MSMg01-151N05.TJ (MSMg01no151_n05.g1)
ACCAG353880AG353881
length820742
length of high quality
(start - end)
160 (43 - 202)443 (71 - 513)
definitionCHROMAT_FILE: MSMg01no151_n05.b1 PHD_FILE: MSMg01no151_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:44 2005CHROMAT_FILE: MSMg01no151_n05.g1 PHD_FILE: MSMg01no151_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,639,560 - 119,639,700)(119,524,848 - 119,525,290)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCCCCAAATCCGGCCTCTTGAGCCAGGTCCTTAGAGTGGTGCCCAGGG
TTAATCCACTTTAGCAAGCACCTCAGTTATTCTAATAACTGCTGTTTCAG
CTCCAAGCACCACGGGTCCTTAGAGGGCACCCTGCTATGACAGTGAGCTA
TGACNCCCCAACCCGTTGACTGTATAACCTGGCGTGGCTAATGACTTATC
TATACCCCTCTTAATTGCGTTCCGCTCTCTTGCCCCTTTCCCCTCGCAAA
ACCTCTCTCGTGTTTTTTTTTATTGAATCTTCCTATTCGCGCGCTAGAGA
GTGCGATGTGCAAAGCGTACCTTTTCTCTCATTTCTCTCGGTTACCCTTG
ACCCTTTGTTTCACCCCCCCCCCCTGTGGTCTTTATTCTTTTTCCCTTAA
TAATCGGAGATACGGCTTGCTTTACTTGAATTTGCGCCGTAATATCATCT
ATACATTCTCTTTTATTCAATTAGCCCACGCTATCCTTTCTTATATGTCT
TTTTAAACGCCCCCCTCTTCCCCGCCCTTCTTGTCCAGATTTCTTCTTCT
CCCCCTTTATAATTTCTTCCGCTCTCTTCTCTCCCGACACTGTGACTGCT
TTGTTCTGTCACGCGTTTCCGGCAGTTGTTTTGCCCCCTTTTTATTCTCT
CCCTTCGTAACCTTAAGTTTCTCCCCCCTGTTTACGGGCTCTTGTCATCG
AGCGCCTAACACACTGTAATCCGGCCCCTTCCCCTCCACCGCTTCTCCAT
CGGCCTAGCCGATAAACACA
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAACAGTAGCTCCATACCTTTGTATCTACA
GGACAGTTTTTGAAATGGAGCCCACCCACTCCCAGGGATAATGAGAGGAA
GAATCTCCAGTGGCCTGTGGGCTGCTGAAGTGTGGAGAGGCTGGAGAGAA
ACATCAAAAGCTTGCTTACTCTAAGGAGTGGCTCAAACACAGGGCTCTGG
TTTCTGCGGGAGCTCAGTGATGGTGTGAGGCCAGCGAAGGCCCTGGAGCT
CAGCTGCTTGCTTCTTAGCCTCTCACTTGAGTCCCACTGGCTGGACTCAG
CTTCCACCTGAATCTGTTAACTTTGAGGTTGTTCTCACCCACTGATGTGT
GCGCACAGGTGCTCGCCCACATGTGTATGTGATATGATGCATATAAATGT
GTGTGTGAGGGTGTGTGTGTGTGTCCATCTTAAGGAAGCCCAGCACACTC
TTGCACAGACTCACCCAAACCCAGTTATCTTCATCTTATGGGACTTTATA
GGTGCCCCTGCCTTTCCAGAGCCTGCAACCTCCTGCGGTTCATTCCTGAT
CTGATACTTCTGATCAGATTCTAGATAGTATCAAATCGATTCTCATTATC
GACACACAAAGGGTGTTGAACGGGACACCTCTCTCCTCCCTGTTACTGTC
CTGCTTGTTTGGCACCCCTGGCATAACCCATTTGAAGTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_n05.b1 MSMg01no151_n05.b1 CHROMAT_FILE:
MSMg01no151_n05.b1 PHD_FILE: MSMg01no151_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:44 2005
         (160 letters)



>mm_chr9_119639357_119639916
          Length = 560

 Score =  265 bits (137), Expect = 9e-76
 Identities = 140/141 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccccccaaatccggcctcttgagccaggtccttagagtggtgcccagggttaat 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggaattccccccaaatctggcctcttgagccaggtccttagagtggtgcccagggttaat 285

                                                                       
Query: 64  ccactttagcaagcacctcagttattctaataactgctgtttcagctccaagcaccacgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccactttagcaagcacctcagttattctaataactgctgtttcagctccaagcaccacgg 225

                                
Query: 124 gtccttagagggcaccctgct 144
           |||||||||||||||||||||
Sbjct: 224 gtccttagagggcaccctgct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 560
Length adjustment: 8
Effective length of query: 152
Effective length of database: 552
Effective search space:    83904
Effective search space used:    83904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no151_n05.g1 MSMg01no151_n05.g1 CHROMAT_FILE:
MSMg01no151_n05.g1 PHD_FILE: MSMg01no151_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:44 2005
         (443 letters)



>mm_chr9_119524648_119525490
          Length = 843

 Score =  818 bits (423), Expect = 0.0
 Identities = 438/443 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacagtagctccatacctttgtatctacaggacagtttttgaaatggagcccacccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacagtagctccatacctttgtatctacaggacagtttttgaaatggagcccacccact 260

                                                                       
Query: 61  cccagggataatgagaggaagaatctccagtggcctgtgggctgctgaagtgtggagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagggataatgagaggaagaatctccagtggcctgtgggctgctgaagtgtggagagg 320

                                                                       
Query: 121 ctggagagaaacatcaaaagcttgcttactctaaggagtggctcaaacacagggctctgg 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggagagaaacatcaaaagctcgcttactctaaggagtggctcaaacacagggctctgg 380

                                                                       
Query: 181 tttctgcgggagctcagtgatggtgtgaggccagcgaaggccctggagctcagctgcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctgcgggagctcagtgatggtgtgaggccagcgaaggccctggagctcagctgcttg 440

                                                                       
Query: 241 cttcttagcctctcacttgagtcccactggctggactcagcttccacctgaatctgttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcttagcctctcacttgagtcccactggctggactcagcttccacctgaatctgttaa 500

                                                                       
Query: 301 ctttgaggttgttctcacccactgatgtgtgcgcacaggtgctcgcccacatgtgtatgt 360
           ||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||
Sbjct: 501 ctttgaggttgttctcacccactgatgtgtgcgcacaggtgcttgtgcacatgtgtatgt 560

                                                                       
Query: 361 gatatgatgcatataaatgtgtgtgtgagggtgtgtgtgtgtgtccatcttaaggaagcc 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatatgatgtatataaatgtgtgtgtgagggtgtgtgtgtgtgtccatcttaaggaagcc 620

                                  
Query: 421 cagcacactcttgcacagactca 443
           |||||||||||||||||||||||
Sbjct: 621 cagcacactcttgcacagactca 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)