BAC Information

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BAC

Clone NameMSMg01-152B18
Chromosome9 (Build37)
Map Location 5,952,160 - 5,952,574
singlet/doubletsinglet
Overlap geneLOC100039372
Upstream geneEG664889, Casp1, Casp4, Casp12, LOC547033, LOC100039361
Downstream geneLOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034, Dync2h1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152B18.T7 (MSMg01no152_b18.b1)MSMg01-152B18.TJ (MSMg01no152_b18.g1)
ACCAG354087AG354088
length743736
length of high quality
(start - end)
697 (45 - 741)662 (75 - 736)
definitionCHROMAT_FILE: MSMg01no152_b18.b1 PHD_FILE: MSMg01no152_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:07 2005CHROMAT_FILE: MSMg01no152_b18.g1 PHD_FILE: MSMg01no152_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTACTGACCAAACACAAATGGCTAAGAAATGCTTAAAGCAGTGCT
CAACATCTTAGCTATCACAGAAATGCAAATCAAAACAACCCTGTGCCTCC
ATCTTGCACCTGCCAGAATGGCATAAATAAATAAATAAATAAATAAATAA
ATAAACAAACAAACAAACAAACGTGACAGCTCATGCTGGTGAGGATGTGA
ATCAAGGGGAACACTCTTCTATTTCTGGTCAGAGTGTAAATTTATACAAT
TGCTCTGGATATCAATTTGGCAGCTTCTTGGAAAATTAGGAATTGATTTA
CCTCAAGACTCAGCTATACTACTCCTGAGCATATACCCAAAGGATATGCC
ATCCTACTACAACCACACGCTCAACTATGTTCATATTAGTCAGAAACTGA
AAACAACCCAGATGTCCTTCAATTAAAGAATGGATAACGAAAATATGGTA
GATTTACACAAAAATCATCAAATTTGCAGGCAACTGGATGGAGGTAGAAA
AAAAACCATTTTGAGTAGGGTAACCCAGACCCAGAAAGAAAATATGGTGT
ATATTCACTCATAAGTGCAGACTAACTGTAAAGTAAAGAATACTCATGCT
ATAATCTACAACTCAGTGAGGCTAAGTAATAAGGAGGGCTCACAGGTTGT
AAATCTTCATGGGAGCAAGAAATAGAGTAGGTTTTGCACGTGT
ATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATTTCTGCCAAAGCCCATAGGATAA
TCAGAGATGACCACTTATATAATGCATTAGTAAGGGTTTCTTAAAAGAAC
ACCACTTACAGAATAGTGACATGCACATAGGGATATTTATTAGATTGGCT
TACAGGATGCTACCCTGCTAGACCAACAATGAGTAACTCACACTAGAGGA
ACTAAGAATCTAGTAGTCGCGGTGGTAAGGTTTCTCGCCTGTGTGAGTTT
GCAGGTGTGCCTTGAGATGAGAACTCTTGGACTGTGACTGGGACGGCTGT
GGGTGGAAGTTCGCCCGCGCCGATGAACTGACCAGGCACTACCGCAAACA
CACAGGGCACCGGCCCCCCCACCGCCAGAAGTGCGACAGGGCCTTTTCCA
GGTGGGACCACCTTGCCTTACACATGAAGAGGCTCTTTTAAATCCCACGT
AGTGGATATGACCCACACTGCCAGGAGAGAGAATTCAGTATTTTTTTTCC
TAACCTTTCACACTGTCTTCCCATGAGGGGAGGAGCCCAGCTGGCAAGCG
CTACAATCATGGTCAAGTTCCCAGCAAGTAAGCTTGTGAATGGATAATCA
GGAGAAAGGAAGAATCCAAGAGACAAAACAGAAATACTAAAAACAAACAA
ACAAACAAACAAATCACAGATGGGCTCTGAGACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_b18.g1 MSMg01no152_b18.g1 CHROMAT_FILE:
MSMg01no152_b18.g1 PHD_FILE: MSMg01no152_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:07 2005
         (662 letters)



>mm_chr9_5951826_5952886
          Length = 1061

 Score =  397 bits (205), Expect = e-114
 Identities = 344/435 (79%), Gaps = 73/435 (16%)
 Strand = Plus / Minus

                                                                       
Query: 258 ctgtgactgggacggctgtgggtggaagttcgcccgcgccgatgaactgaccaggcacta 317
           ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 749 ctgtgactgggacgggtgtgggtggaaattcgcccgctccgatgaactgaccaggcacta 690

                                                                       
Query: 318 ccgcaaacacacagggcaccggcccccccaccgccagaagtgcgacagggccttttccag 377
           |||                ||||||   ||  ||||||||||||||||| ||||||||||
Sbjct: 689 ccg----------------cggccctttcagtgccagaagtgcgacaggaccttttccag 646

                                                                       
Query: 378 gtgggaccaccttgccttacacatgaagaggctcttttaaatcccacgtagtggatatga 437
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 645 gtcggaccaccttgccttacacatgaagaggctcttttaaatcccacgtagtgaatatga 586

                                                                       
Query: 438 cccacactgccaggagagagaattca-gtattttttt----------------------- 473
           ||||||| || |||||||||| |||| || |||||||                       
Sbjct: 585 cccacacagcaaggagagagagttcaggt-tttttttgttttgttttgttttgttttgtt 527

                                                                       
Query: 474 -----------------------------tcctaacctttcacactgtcttcccatgagg 504
                                        | ||||||||||||||||||||||||  |||
Sbjct: 526 ttgttttgttttgttttgttttgtttttgt-ctaacctttcacactgtcttcccacaagg 468

                                                                       
Query: 505 ggaggagcccagctggcaagcgctacaatcatggtcaagttcccagcaagtaagcttgtg 564
           |||||||||||| |||||||||||  ||||||||||||||||||||||||| ||||||||
Sbjct: 467 ggaggagcccaggtggcaagcgct--aatcatggtcaagttcccagcaagtcagcttgtg 410

                                                                       
Query: 565 aatggataatcaggagaaaggaagaatccaagagacaaaacagaaatactaaaaacaaac 624
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aatggataatcaggagaaaggaagaatccaagagacaaaacagaaatactaaaaacaaac 350

                          
Query: 625 aaacaaacaaacaaa 639
           |||||||||||||||
Sbjct: 349 aaacaaacaaacaaa 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1061
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1051
Effective search space:   685252
Effective search space used:   685252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)