BAC Information

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BAC

Clone NameMSMg01-152C09
Chromosome9 (Build37)
Map Location 80,758,971 - 80,759,426
singlet/doubletsinglet
Overlap genenone
Upstream geneFilip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038, Htr1b, LOC671392, 4930486G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152C09.T7 (MSMg01no152_c09.b1)MSMg01-152C09.TJ (MSMg01no152_c09.g1)
ACCAG354114AG354115
length735731
length of high quality
(start - end)
482 (72 - 553)454 (76 - 529)
definitionCHROMAT_FILE: MSMg01no152_c09.b1 PHD_FILE: MSMg01no152_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:10 2005CHROMAT_FILE: MSMg01no152_c09.g1 PHD_FILE: MSMg01no152_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACACAATCCGCGGA
ATTCAGAACTCTTTAGCTGGGGAACAGGGTACCCGTAAGTATAGCTTTAC
AAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCA
GAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTT
TCTAGTGTTAGGAGCCTTTTTGTTCCTTTTCACATGTTATCAAGCGGTTA
AGGCAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCATAAGTA
AAGCGGGGAGAGAGAGTAGGAGCAAAGAGGAAATATGGTTCACAAAATAA
GTATACAGGCCTTTCCACGGGTCTTGAACCTGAGGAAAAGTTTAGGTCAG
GTAAGAATACCTGGGGAGAGATTAGAAGGAAGGAAAAGAAAAAAGAAAAG
AAAAAAGATCAATTAGCAGAGGTTTCTAGGAGAAGGAGCCTATACTCATC
ACTAGATGAGCTCAAGGAGCCAGTTCTTAGTAGTTCTGAATCAGATGAAA
AGGCTATTACGGCCTGGAAGGCGCTCTCCCGAGCAGGTGAGGCCACTGGA
CAACTAACAAAGATCGTCCAGAGACCACAGGAGTCATTCTCAGATTTTGT
GGCCAGAATGACAGAGGCAGCAGAGCGTATTTTTGGAGATTCAGAGCAAG
CCACACCTCTGGTAGACCAGCTCATTTATGAGCAN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTAGAAAGCATGAGAGGATATTTG
AATAAACAAAAGAACAAAGCTCTCTTGCAAGCCTGCACTGGATGGAAGTC
AGTAGGTTGCTAAAACTTAGATGCTTATTTTCCTAGTTTAATGGCCCATT
CTGCCTGACTTTATACTCTCAGGATTTGGTGATTTTATACTGGCTTTACT
TTTTTCTTTTTTGGGGTCCAGAACACTTTTATTAAATAGTACAATAAATT
ATGACTTTAAAAATTTAAAAGCTATTTGATTATTTTCAGAGTAAAACCAC
TCAATTTCTTTTTTATTGTGTTTAAAATTTACTGTCAGAGAGGCCTCCTC
CATTAGCTGATGGGGCAAATGCAGAGACACTTAGCCAAACATTAGGTGGA
ATTTAGGAAACCCTTGCAGAGGAGAGCGGCGAAATGTTGTAGGAGACAGG
AGGGTAGAAGATACTAGGAAGACTCAGTCCGCACAATCAACTAAGAAAGG
CTCTCCTAGAGACCACAGATACTGAAGTGGCAGTCAAGGAGCCTGCATGG
ATGTATACTACACACCTGAATAAAACTTATGGTTGTTTAACTTGTGATTT
TTGCGGGAGTCCTAACAATGTAACTGGGGATGTCTCTGACTCTTTTGCCT
GCCCTTGCGATCCTTTCCCTTCTAACCGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_c09.g1 MSMg01no152_c09.g1 CHROMAT_FILE:
MSMg01no152_c09.g1 PHD_FILE: MSMg01no152_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:10 2005
         (454 letters)



>mm_chr9_80758771_80759626
          Length = 856

 Score =  843 bits (436), Expect = 0.0
 Identities = 451/456 (98%), Gaps = 2/456 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagaaagcatgagaggatatttgaataaacaaaagaacaaagctctcttgcaagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagaaagcatgagaggatatttgaataaacaaaagaacaaagctctcttgcaagcctg 260

                                                                       
Query: 61  cactggatggaagtcagtaggttgctaaaacttagatgcttattttcctagtttaatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactggatggaagtcagtaggttgctaaaacttagatgcttattttcctagtttaatggc 320

                                                                       
Query: 121 ccattctgcctgactttatactctcaggatttggtgattttatactggctttactttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattctgcctgactttatactctcaggatttggtgattttatactggctttactttttt 380

                                                                       
Query: 181 cttttttggggt-ccagaacacttttattaaatagtacaataaattatgactttaaaaat 239
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttttggggggccagaacacttttattaaatagtacaataaattatgactttaaaaat 440

                                                                       
Query: 240 ttaaaagctatttgattattttcagagtaaaaccactcaatttctttttt-attgtgttt 298
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 ttaaaagctatttgattattttcagagtaaaaccactcaatttctttttttattgtgttt 500

                                                                       
Query: 299 aaaatttactgtcagagaggcctcctccattagctgatggggcaaatgcagagacactta 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaatttactgtcagagaggcctcctccattagctgatggggcaaatgcagagacactta 560

                                                                       
Query: 359 gccaaacattaggtggaatttaggaaacccttgcagaggagagcggcgaaatgttgtagg 418
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 gccaaacattaggtggaatttaggaaacccttgcagaggagagcggtgaaatgttgtagg 620

                                               
Query: 419 agacaggagggtagaagatactaggaagactcagtc 454
           ||||||||||||||||||||||||||| ||||||||
Sbjct: 621 agacaggagggtagaagatactaggaaaactcagtc 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 856
Length adjustment: 10
Effective length of query: 444
Effective length of database: 846
Effective search space:   375624
Effective search space used:   375624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)