BAC Information

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BAC

Clone NameMSMg01-152D20
Chromosome9 (Build37)
Map Location 82,962,783 - 82,963,101
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039085, Irak1bp1, Phip
Downstream geneLOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152D20.T7 (MSMg01no152_d20.b1)MSMg01-152D20.TJ (MSMg01no152_d20.g1)
ACCAG354179AG354180
length759741
length of high quality
(start - end)
---320 (78 - 397)
definitionCHROMAT_FILE: MSMg01no152_d20.b1 PHD_FILE: MSMg01no152_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:17 2005CHROMAT_FILE: MSMg01no152_d20.g1 PHD_FILE: MSMg01no152_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCCGATGCCAXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCCCTAAAAGCTGTCGAGACACCTGCTTCAATTATTTTGTCGCTTCT
CGGCAACATTCCTATTGCACATAGGACGTATATCCCCATCCTCACTCACT
GAATCAATGCATGCATCCGTTATCCTGAAAACCAGCGTAATCTCATCACT
CGATGGCTGATAATACTGTAATCCAATGATCCCAGATATGATACATTAAA
TACCAAGTGCATAGACTGGAAAAAGATTCCCATCCACCACAGAAACACCG
CGACGCTTATCCTTTCCTGAAAGTTCCAACCAAAATAGCTGTATCATGTA
CCTTTACCCTAAACTCGTAGGAACAGAAACGCAGTTTACCTTTCTGAAAA
GGAGATGAAGCGACCGGTGAGTCTCCCTCTCCTTCTCTACTCTTACGCTG
CCGTCTCTGCATAGACTACCTGTCGCCTATTTTCATGTGAATGATTTGTG
CCGTACCCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCATTCAGGATAAGATCTGAGGGAAGACCTTGCAGCT
TAGAAAGAACAGAGATCAAAGAGGAGAGCAGTGTCAGCCTATCTGAGCCC
AGGTGGGCGTTTCAGCAGAGAAGAGCGACAGAGTCAGAGAATGAGTCTTG
CTCTCAACAGTCCCTAACAGGTAGAGCCCCGCGTAATGTGTAGTGTCAGA
TGCGCTGGGGAACATTCCAAGCTGATGGCCTTTTCTTCCTTCTAGAACAC
GAGGGAGCATGAGATGAGCAGTTACCTAGAGTAGAGGGTCTGTGCTTCTG
CCTCTTTAGCCTGTGTGCAGTTAGCATCTAATACAGAATTGCCTACACAT
CCTGGGGGTTAAAGAAAGGATCTTGAACGGACCATTGGGTTACCAAGGTC
CAGAGGCGAGGTATACAGGCTAGCGGACGAGTGGTGAGGTCAAAGGAACC
ACCCATAACCAGCAATCACTAGCTCAAGGACCACTCAGGCATCCTACTCT
AAGTCTCCTGTGGATCTCTGATGCCCATCTTCTGATCTGAAAGTCAGAAA
GCCTCTTCCTTGCGACCACTCTGCCCACATGTAGTCTTGACAGTGCCCTG
CACCTGATTAACCATAACACATTTCCCCAACAACTATCCTCCCCCTACAG
CACTTGAGGCTCTACATAGAGAACGTGGTTAATCTTTGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_d20.g1 MSMg01no152_d20.g1 CHROMAT_FILE:
MSMg01no152_d20.g1 PHD_FILE: MSMg01no152_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:17 2005
         (320 letters)



>mm_chr9_82962583_82963302
          Length = 720

 Score =  571 bits (295), Expect = e-167
 Identities = 313/319 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgagggaagaccttgcagcttagaaagaacagagatcaaagaggagagcagtgtcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atctgagggaagaccttgcagcttagaaagaacagagatcaaagaggagagcagtgtcag 460

                                                                       
Query: 61  cctatctgagcccaggtgggcgtttcagcagagaagagcgacagagtcagagaatgagtc 120
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cctatccgagcccaggtgagcgtttcagcagagaagagcgacagagtcagagaatgagtc 400

                                                                       
Query: 121 ttgctctcaacagtccctaacaggtagagccccgcgtaatgtgtagtgtcagatgcgctg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 399 ttgctctcaacagtccctaacaggtagagccccgcggaatgtgtagtgtcagatgcgctg 340

                                                                       
Query: 181 gggaacattccaagctgatggccttttcttccttctagaacacgagggagcatgagatga 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gggaacattcaaagctgatggccttttcttccttctagaacacgagggagcatgagatga 280

                                                                       
Query: 241 gcagttacctagagtagagggtctgtgcttctgcctctttagcctgtgtgcagttagcat 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gcagttacctagaacagagggtctgtgcttctgcctctttagcctgtgtgcagttagcat 220

                              
Query: 301 ctaatacagaattgcctac 319
           |||||||||||||||||||
Sbjct: 219 ctaatacagaattgcctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)