Query= MSMg01no152_j18.b1 MSMg01no152_j18.b1 CHROMAT_FILE:
MSMg01no152_j18.b1 PHD_FILE: MSMg01no152_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:44 2005
(681 letters)
>mm_chr9_49648035_49649115
Length = 1081
Score = 1046 bits (541), Expect = 0.0
Identities = 577/589 (97%)
Strand = Plus / Minus
Query: 93 tgacacagagttataggtagacattagggctaggtatttagtaaacaaaataatggaaac 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 tgacacagagttataggtagacattagggctaggtatttagtaaacaaaataatggaaac 1008
Query: 153 atagatactttgaaatatcaaacaaggaaacattgttggtttaggtgtgtcctgtgtaat 212
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1007 atagatactttgaaatatcaaacaaggaaacattgttggtttaagtgtgtcctgtgtaat 948
Query: 213 gaatgaaacatccagaaacacacacacactaaatgttatccattgtttatctgaaatgca 272
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 947 gaatgaaacattcagaaacatacacacactaaatgttatccattgtttatctgaaatgca 888
Query: 273 aatctatattatgctgccaaactttggtttgtaaccaagatgaaaccaatattccacctc 332
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 aatctatattatgctaccaaactttggtttgtaaccaagatgaaaccaatattccacctc 828
Query: 333 tgacttctataagatcagaactttggactacctagttattaaactcagttctaatagcat 392
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 827 tgacttctataagatcagaactttcgactacctagttattaaactcagttctaatagcat 768
Query: 393 taaatttaaaggaaatacattagcttacctatataggaactgcatagggcaccaagagaa 452
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 767 taaatttaaaggaaatacattagcttacctatataggaactgcatcgggcaccaagagaa 708
Query: 453 tcaagggttcaagcaatgagtgaggtctcaggctctgagacttactctcagttgggtgtt 512
||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 707 tcaagggctcaagcaatgagtgaggtctcaggttctgaggcttactctcagttgggtgtt 648
Query: 513 ttccagagcccaaacctctacttatgggaggaagactcttccactggcaagcatttatgc 572
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ttccagagcccaaacctctatttatgggaggaagactcttccactggcaagcatttatgc 588
Query: 573 ttgacttaatatatagaaagttaactttcccaacagctatacatcaattcagggcaattc 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttgacttaatatatagaaagttaactttcccaacagctatacatcaattcagggcaattc 528
Query: 633 tatgtggtttcacgtgaatattgtgtctgcctctaaccttataatgtgt 681
||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 527 tatgtggcttcacttgaatattgtgtctgcctctaaccttataatgtgt 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no152_j18.g1 MSMg01no152_j18.g1 CHROMAT_FILE:
MSMg01no152_j18.g1 PHD_FILE: MSMg01no152_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:44 2005
(640 letters)
>mm_chr9_49544477_49545515
Length = 1039
Score = 1139 bits (589), Expect = 0.0
Identities = 627/640 (97%), Gaps = 1/640 (0%)
Strand = Plus / Plus
Query: 1 caccccttggctccaaatgtcagctaactcccagaactgaaggtaagaatcacaagttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 caccccttggctccaaatgtcagctaactcccagaactgaaggtaagaatcacaacttgc 260
Query: 61 cctgccctaaagaaggaatcatacacggaaggacccaaacctatccttggaccagccaag 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgccctaaagaaggaatcatacatggaaggacccaaacctatccttggaccagccaag 320
Query: 121 cctttctggagatggttgtggtagacattgagaaaagcaattccagagaccaggtaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttctggagatggttgtggtagacattgagaaaagcaattccagagaccaggtaggtt 380
Query: 181 ccctttcccattctcccacctccagtgagctcaaggatgtcctactggaacctcttgacg 240
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 cccttttccattctcccacctccagtgagctcaaggatgtcctactggaacctcttgatg 440
Query: 241 agataagacttactcatcagggagggaaacctagacccaagtgccttgagaagcctgggg 300
| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acataagacatac-catcagggagggaaacctagacccaagtgccttgagaagcctgggg 499
Query: 301 tactgcaagttcttactggcttgtgtctaaggtgcctaggaagcatttttgaaggtatca 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcctgcaagttcttactggcttgtgtctaaggtgcctaggaagcatttttgaaggtatca 559
Query: 361 actgaaatcttcccatacacatgagatacaccttgacacctcaacagggttgaacacatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 actgaaatcttcccatacacatgagatacaccttgacacctcaacagggttgaacacaag 619
Query: 421 gttcactgaatgccaaaagctgtcctgagtctaaaaaagggctatttcaaaagaattctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gttcactgaatgccaaaagctgtcctgagtctaaaaaagggctatttcaaaagaattctc 679
Query: 481 tgctgtttccatccgaaacaagaaaacagtgtccttgactctgaaatgatcaacttgatc 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 680 tgctgtttccatccgaaacaagaaaacagtgtccttgactctgaaatggtcaacttgatc 739
Query: 541 ttgaatgcatattcacatgttgtcatgagcttanagacatgaacacagatgtgtacagag 600
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 740 ttgaatgcatattcacatgttgtcatgagcttaaagacacgaacacagatgtgtacagag 799
Query: 601 aggatggaaaatcctgaaattcccaagtaggcccatgtag 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aggatggaaaatcctgaaattcccaagtaggcccatgtag 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1039
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1029
Effective search space: 648270
Effective search space used: 648270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
