BAC Information

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BAC

Clone NameMSMg01-153F17
Chromosome9 (Build37)
Map Location 24,638,514 - 24,639,035
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4, Tbx20, LOC666251
Downstream geneLOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153F17.T7 (MSMg01no153_f17.b1)MSMg01-153F17.TJ (MSMg01no153_f17.g1)
ACCAG354980AG354981
length721719
length of high quality
(start - end)
---522 (73 - 594)
definitionCHROMAT_FILE: MSMg01no153_f17.b1 PHD_FILE: MSMg01no153_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:43 2005CHROMAT_FILE: MSMg01no153_f17.g1 PHD_FILE: MSMg01no153_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCTCACCTTTCCCATACCGAATGGCTGAGAAGCACCTGAGAAAATGTG
TCCCATCCTTAATCATCTCGCATATGCATATCAAAACAACCCTGAGATTC
CACTTCACTCCGGGCAGAATGGCTAATATCTGAAACTCAGGTGATTCCTC
ATGCTGGCGAGGATGTGTAGAAAGGCGAACACTCCTCCATTGTTGGAGGC
ATTGCAAGCTTGTACGACAATTCCATTTTGCATTAACCAACGACTCCTGA
ACATGGGGTCTGCCCTGGAATGCAGTGTGCTTAAACGGCATCGATCATAG
ATAATTTCATGGTATTCCACCAAACTGGAAAACCTACAAGAAATCCATGA
GAGTTTTAGCAAATATAAGCTATGGAAGTTAAATCAGGATGAAATAAACA
ATTTAAACTAACTCGTAGCTCACAGCAAAATAGAAGCAATAAGTACCATT
CTCCCAAGCAGGTACAGAATAGGTCACCCAGTGATTTATAGCACTGGCTG
TTCCTCCAGAAGGTCAGGGTTTGATTCGCACCACCCACATGGGAGCTCAG
AGCTGTTCTAATTCCACGACCAGGAACCAATGCCCTCTGCTGTGCTCCGT
GCGCACCAGGCACAAACATGTATTGCAGACTTACCTGAAAGATGACCGTC
TGTACACATACATTCTAATTT
TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTAATAATCTTATTTTTGCCTGTAATTG
TCACAGGCAGAGGGAGCAACACTGGGAAGCCATGTCTGGCGTCTATCCCT
AGTTCTTCATCCAGACCTGCATAACATTAGACAAAACAATGGCATCCCTC
CTGCCAGTCTCTTTATGTCTTTCTTGATTGTTGAAGCTGTGGGGAAGACT
GGAAGTGACTTCATAATGAAATTGTTTTATCAATTACTTTTTAATGTAGT
GAACTGTAAAGAACAGGTATACTGGAGGTACATGGCTCCGATCTGGACTG
TACAGAGCAGACTGGAGCCAGTTCTCTCTGAATATCCTGTCTGTGAGGAG
ACACAGAGCAAGGAACAGATCAGAGGCTCTGGAGGAGGAAGTGACAAGCA
ACTGGAAATCTCCATTGGGACAACTCTAGAGGAAAGGCTTTGAACTTGGT
CGCCAACATGGTGGGAACCATTTCAATGATGGAGAGCATGGGCGAAGGAC
AATGGCAAAAGGCGATTTTCCAGGTTGATATATGTCGTTTTAAATGAGTG
TGGGGACATGTGAATTTTCTACTTCTTCATGTTAATTCCCTAGGACTTGG
TTCACATAATCTCACAGTTGACTGAACATTCCCCTTTGACCTCTCCCTCC
TCTGGGACCAACTTAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_f17.g1 MSMg01no153_f17.g1 CHROMAT_FILE:
MSMg01no153_f17.g1 PHD_FILE: MSMg01no153_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:43 2005
         (522 letters)



>mm_chr9_24638314_24639235
          Length = 922

 Score =  978 bits (506), Expect = 0.0
 Identities = 518/522 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaataatcttatttttgcctgtaattgtcacaggcagagggagcaacactgggaagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ctaataatcttatttttgcctgtaattgtcacaggcagagggagcaacactgggaagcca 663

                                                                       
Query: 61  tgtctggcgtctatccctagttcttcatccagacctgcataacattagacaaaacaatgg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tgtctggcgtccatccctagttcttcatccagacctgcataacattagacaaaacaatgg 603

                                                                       
Query: 121 catccctcctgccagtctctttatgtctttcttgattgttgaagctgtggggaagactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 catccctcctgccagtctctttatgtctttcttgattgttgaagctgtggggaagactgg 543

                                                                       
Query: 181 aagtgacttcataatgaaattgttttatcaattactttttaatgtagtgaactgtaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aagtgacttcataatgaaattgttttatcaattactttttaatgtagtgaactgtaaaga 483

                                                                       
Query: 241 acaggtatactggaggtacatggctccgatctggactgtacagagcagactggagccagt 300
           ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acaggcagactagaggtacatggctccgatctggactgtacagagcagactggagccagt 423

                                                                       
Query: 301 tctctctgaatatcctgtctgtgaggagacacagagcaaggaacagatcagaggctctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tctctctgaatatcctgtctgtgaggagacacagagcaaggaacagatcagaggctctgg 363

                                                                       
Query: 361 aggaggaagtgacaagcaactggaaatctccattgggacaactctagaggaaaggctttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aggaggaagtgacaagcaactggaaatctccattgggacaactctagaggaaaggctttg 303

                                                                       
Query: 421 aacttggtcgccaacatggtgggaaccatttcaatgatggagagcatgggcgaaggacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aacttggtcgccaacatggtgggaaccatttcaatgatggagagcatgggcgaaggacaa 243

                                                     
Query: 481 tggcaaaaggcgattttccaggttgatatatgtcgttttaaa 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tggcaaaaggcgattttccaggttgatatatgtcgttttaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)