BAC Information

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BAC

Clone NameMSMg01-153G17
Chromosome9 (Build37)
Map Location 24,638,404 - 24,639,035
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4, Tbx20, LOC666251
Downstream geneLOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153G17.T7 (MSMg01no153_g17.b1)MSMg01-153G17.TJ (MSMg01no153_g17.g1)
ACCAG355024AG355025
length728726
length of high quality
(start - end)
636 (36 - 671)632 (65 - 696)
definitionCHROMAT_FILE: MSMg01no153_g17.b1 PHD_FILE: MSMg01no153_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:47 2005CHROMAT_FILE: MSMg01no153_g17.g1 PHD_FILE: MSMg01no153_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGATTCTCACCT
GATGACACCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTA
ATCATCAGGGAAATGCATATCAAAACAACCCTGAGATTCCACTTCACTCC
AGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCGAG
GATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTT
GTACAAAAATTCCATTTTGCATTAGCCAACAACTCCTGTACATGGGGCCT
GCCCTGGAATGCAGTGTTCTTAACCGGTATCAATCATAGATAATTTCATG
GTATTCCACCAAACTGGAAAACCTACAAGAAATCGATGAATGTTTTAGCA
AATATAATCTATGGAAGTTAAATCAAGATGAAATAAACAATTTAAACTAA
CTCATAGCTCACAGTAAAATAGAAGCAATAATTAAAATTCTCCCAAGCAG
GGGCAGAAGAGGTCACCCAGTGGTTTAGAGCACTGGCTGTTCCTCCAGAA
GGTCAGGGTTTGATTCCCACCACCCACATGGCAGCTCATAGCTGTTCTAA
TTCCAGGTCCAGGAACCAATGCCCTCTGCTGGCCTCCGTGGGCACCAGGC
ACAAACATGTAATGCAGACATACATGAAGATAAGCATCTGTACACATACA
TTCTAACTTAATGGAGACAACAAACATA
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTAATAATCTTATTTTTGCCTGTAATTGTCACAGGC
AGAGGGAGCAACACTGGGAAGCCATGTCTGGCGTCTATCCCTAGTTCTTC
ATCCAGACCTGCATAACATTAGACAAAACAATGGCATCCCTCCTGCCAGT
CTCTTTATGTCTTTCTTGATTGTTGAAGCTGTGGGGAAGACTGGAAGTGA
CTTCATAATGAAATTGTTTTATCAATTACTTTTTAATGTAGTGAACTGTA
AAGAACAGGTAGACTGGAGGTACATGGCTCCGATCTGGACTGTACAGAGC
AGACTGGAGCCAGTTCTCTCTGAATATCCTGTCTGTGAGGAGACACAGAG
CAAGGAACAGATCAGAGGCTCTGGAGGAGGAAGTGACAAGCAACTGGAAA
TCTCCATTGGGACAACTCTAGAGGAAAGGCTTTGAACTTGGTCGCCAACA
TGGTGGGAACCATTTCAATGATGGAGAGCATGGGCGAAGGACAATGGCAA
AAGGCGATTTTCCAGGTTGATATATGTCGTTTTAAATGAGTGTGGGGACA
TGTGAATTTTCTACTTCTTCATGTTAATTCCCTAGGACTTGGTTCACATA
ATCTCACAGTTGACTGAACATTCCCCTTTGACCTCTCCCTCCTCTGGGAC
CAACTTAGGTTTAATTGAAGCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_g17.g1 MSMg01no153_g17.g1 CHROMAT_FILE:
MSMg01no153_g17.g1 PHD_FILE: MSMg01no153_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:47 2005
         (632 letters)



>mm_chr9_24638204_24639235
          Length = 1032

 Score = 1191 bits (616), Expect = 0.0
 Identities = 628/632 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaataatcttatttttgcctgtaattgtcacaggcagagggagcaacactgggaagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ctaataatcttatttttgcctgtaattgtcacaggcagagggagcaacactgggaagcca 773

                                                                       
Query: 61  tgtctggcgtctatccctagttcttcatccagacctgcataacattagacaaaacaatgg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tgtctggcgtccatccctagttcttcatccagacctgcataacattagacaaaacaatgg 713

                                                                       
Query: 121 catccctcctgccagtctctttatgtctttcttgattgttgaagctgtggggaagactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 catccctcctgccagtctctttatgtctttcttgattgttgaagctgtggggaagactgg 653

                                                                       
Query: 181 aagtgacttcataatgaaattgttttatcaattactttttaatgtagtgaactgtaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aagtgacttcataatgaaattgttttatcaattactttttaatgtagtgaactgtaaaga 593

                                                                       
Query: 241 acaggtagactggaggtacatggctccgatctggactgtacagagcagactggagccagt 300
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 acaggcagactagaggtacatggctccgatctggactgtacagagcagactggagccagt 533

                                                                       
Query: 301 tctctctgaatatcctgtctgtgaggagacacagagcaaggaacagatcagaggctctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tctctctgaatatcctgtctgtgaggagacacagagcaaggaacagatcagaggctctgg 473

                                                                       
Query: 361 aggaggaagtgacaagcaactggaaatctccattgggacaactctagaggaaaggctttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aggaggaagtgacaagcaactggaaatctccattgggacaactctagaggaaaggctttg 413

                                                                       
Query: 421 aacttggtcgccaacatggtgggaaccatttcaatgatggagagcatgggcgaaggacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aacttggtcgccaacatggtgggaaccatttcaatgatggagagcatgggcgaaggacaa 353

                                                                       
Query: 481 tggcaaaaggcgattttccaggttgatatatgtcgttttaaatgagtgtggggacatgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tggcaaaaggcgattttccaggttgatatatgtcgttttaaatgagtgtggggacatgtg 293

                                                                       
Query: 541 aattttctacttcttcatgttaattccctaggacttggttcacataatctcacagttgac 600
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aattttttacttcttcatgttaattccctaggacttggttcacataatctcacagttgac 233

                                           
Query: 601 tgaacattcccctttgacctctccctcctctg 632
           ||||||||||||||||||||||||||||||||
Sbjct: 232 tgaacattcccctttgacctctccctcctctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)