BAC Information

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BAC

Clone NameMSMg01-153I09
Chromosome9 (Build37)
Map Location 8,255,756 - 8,256,267
singlet/doubletsinglet
Overlap genenone
Upstream geneMmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik
Downstream geneTrpc6, Pgr, 9030420J04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153I09.T7 (MSMg01no153_i09.b1)MSMg01-153I09.TJ (MSMg01no153_i09.g1)
ACCAG355100AG355101
length706707
length of high quality
(start - end)
445 (118 - 562)513 (128 - 640)
definitionCHROMAT_FILE: MSMg01no153_i09.b1 PHD_FILE: MSMg01no153_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:55 2005CHROMAT_FILE: MSMg01no153_i09.g1 PHD_FILE: MSMg01no153_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCCGTATACGACTCCTATTTCGAGAGAATCCGCGGAATTCC
ATGATATCCACTCACTGATAAGTGATATTAAGCCACGAAATTTACAATAC
CAAAGATACAATTTGCACAACACATGAAACTCGAGAAGAAGGAAGACCAA
AGTGTGAATACTTTGTTCTTTCTTACAATGGGAAACAAAATACCCATGGA
AGGAGTTGCAGTAACAAAGTTTGGAGCTGAGACTGAAGGAAGGACCATCC
AGAGACTGCTCCACCTGGGGATCCATCTCATAATCAGCCACCAAACACAG
ACACTAAAGCATATGCCTGCAAGATTTTGCTGACAGGACCCTGATATATC
TGTCTCTTGTGAGGCTAGGCCAGTGTCTGGCAAATACAAAGTGTATGCTC
ACAGTCATCTATTGGATGGATCACAGGGACCCCAATGGAGGAGCTAGAAA
AATGACCCAATGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACAA
TATGAACTAACCAGTGCCCCCAGAGCTGGTGTCTCTACCTATATATGTAG
CAGAAAATGGCCTAGCTGGCCATCATTGGGAGGAGAGGTCTTTGGTCTTG
CAAAGATTATATGCCCCACTACAGGAGAATGCCAGGGCCAGGAAGCACGA
GTGGGAGAGTTGGGGAGCAGGGTGTTAGGAGGTCATAGGACACTTTGGAC
ATGGTC
TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGCCACTGAGAGGTTTTCTCAGAAAATAG
TACACAGAACCTGAGGAGTGACAGCAGAGGTTATCCTCTGACCAACACAT
GTATATGCACACACCTGCACATCCATCTACAGAGAGAGAAAGAGAGGTTT
TATAAAACCTGCTAAGGTTTTGTTCCAAATGTCAAGAGTAGATGGGCTTT
ATCCTAAAAATAACATTGCCAATCTTTACTGTGCTGTTTGTCTTTTTCCT
TCTTTCCTGTAAAATCTTCGTGATGTTTGCCACTAAACAAGACCCCATAA
ACACTACATAAAAGAAATACATCTCATATGGTATTACTTAGGAAGAATGT
AGGCGATAATATTTCTGGAGAACAATTTGGCTGTGTAAATCTAAAGCATC
TAAAAACTACAATCTCTCTGACTCCAACAGCCCATTTCTTGGAATTTATC
CTCAGAGAAACAAGCATGACTATGTCTTCAAGCACAATGGCAACATTAAT
ATTCATCAAAGTAAGATTTATTTTAGAGCATTATAAATCATGTGTAATAA
AATAATGTTTTTCAATCTGTGACACATTAAAACTGATCACAAATATAGAA
TATTTTAATTAGCATAAAAGATCTCTAGAATATACTACTGTATTTTGGAA
AGCAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_i09.g1 MSMg01no153_i09.g1 CHROMAT_FILE:
MSMg01no153_i09.g1 PHD_FILE: MSMg01no153_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:55 2005
         (513 letters)



>mm_chr9_8255555_8256467
          Length = 913

 Score =  959 bits (496), Expect = 0.0
 Identities = 508/512 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggttatcctctgaccaacacatgtatatgcacacacctgcacatccatctacagagagag 61
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 202 ggttatcctctgaccaacacatgtatatgcacacacctgcacattcatctacagagagag 261

                                                                       
Query: 62  aaagagaggttttataaaacctgctaaggttttgttccaaatgtcaagagtagatgggct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaagagaggttttataaaacctgctaaggttttgttccaaatgtcaagagtagatgggct 321

                                                                       
Query: 122 ttatcctaaaaataacattgccaatctttactgtgctgtttgtctttttccttctttcct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttatcctaaaaataacattgccaatctttactgtgctgtttgtctttttccttctttcct 381

                                                                       
Query: 182 gtaaaatcttcgtgatgtttgccactaaacaagaccccataaacactacataaaagaaat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtaaaatcttcgtgatgtttgccactaaacaagaccccataaacactacataaaagaaat 441

                                                                       
Query: 242 acatctcatatggtattacttaggaagaatgtaggcgataatatttctggagaacaattt 301
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 442 acatctcatatggtattacttaggaagaatgtaggtgataatatttctggagaacaattt 501

                                                                       
Query: 302 ggctgtgtaaatctaaagcatctaaaaactacaatctctctgactccaacagcccatttc 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 502 ggctgtgtaaatctaaagcatctaaaaactacaatctctctgactccaacagtccatttc 561

                                                                       
Query: 362 ttggaatttatcctcagagaaacaagcatgactatgtcttcaagcacaatggcaacatta 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttggaatttatcctcagagaaacaagcatgactatgtcttcaagcacaatggcaacatta 621

                                                                       
Query: 422 atattcatcaaagtaagatttattttagagcattataaatcatgtgtaataaaataatgt 481
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 622 atattcatcaaagtaagatttattttaaagcattataaatcatgtgtaataaaataatgt 681

                                           
Query: 482 ttttcaatctgtgacacattaaaactgatcac 513
           ||||||||||||||||||||||||||||||||
Sbjct: 682 ttttcaatctgtgacacattaaaactgatcac 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)