BAC Information

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BAC

Clone NameMSMg01-154E02
Chromosome9 (Build37)
Map Location 18,741,511 - 18,741,994
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1
Downstream geneOlfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154E02.T7 (MSMg01no154_e02.b1)MSMg01-154E02.TJ (MSMg01no154_e02.g1)
ACCAG355601AG355602
length672687
length of high quality
(start - end)
455 (31 - 485)509 (72 - 580)
definitionCHROMAT_FILE: MSMg01no154_e02.b1 PHD_FILE: MSMg01no154_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:50 2005CHROMAT_FILE: MSMg01no154_e02.g1 PHD_FILE: MSMg01no154_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCGGCGCTATACGACTCCTATATCGAGAGATCCGCGGAATTCCTCATCTT
TCATTTAACTTTTTTTAAAAAAATGTTTTCTCTTTTTCTTTACTTTTTTT
TATTAGATATTTTGTTCATTTACATTTCAAATGCTATCCCGAAAATCCCC
TACATCCTTCTCAAGCCCTGCTCCCTAACTCACCCACTCCTGCTTACTGG
CCCTGGCATTCCCCTGTACTGGGGCATATAATCTTCACAAGAACAAGGGC
CTCTTATCCCATTGATAGCTGACTAGGCCATCCTTGGCTACATATGCAAC
TAGAGACACAAGCCTGAGTCGGGGGGAGGGGGTACTGGTTAGTTCATATT
GTAGTTCCTTCTGTAGGGTTGCAGACTCCTTTAGCTCCTTGGTTACTTAC
TCTAGCTCCTTCATTGGGGACCATGGGTTCCATCCAATAGATGACTATGA
GCATCCACTTCTATATTTGCCAGGCACTGGCATAGCCTCACAAGAGATAG
CCATATTAGGGTCCTGTCAGCAAAATCTTGCTGGCATATGCAATAGTGTC
TGGCCTTGGTGGTTGTTTATAGGATGGATCACCAGGTATGGCATTATCTG
GATGGTCCTTCCCTTCCTTCTCAGCTCTGAACTTTGTCTCCGGAACTCCT
CCATGGGTAATTTTCTTCCCCT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGAAATCATTTTCTACTTGTCAAGGAAAAAAATGA
GGTGAGTTGAGAAAAGAGAAGACAGGCAACAAGAAGTTAGATAAGAAGAG
GGAAGGCAGGACAGGAGAAAAAGAGAAAAGTCAGGAGAGGACAATAGGAG
AGAAAATAAAACTACCAAAAATGAGAAGGAGTGAAAGGAACAGACGGAGA
AGGTAGGAGCAGGGAGAAGATGTGAGAGGACATGAGAGAGAAGCAAAACA
TGATTTAAAAGGGAGAATTGTAGCAGAAGGAAATAAATAAATAAAACAGA
AACCCCCATGTCTCATGTATATACTGTGAAAAACTTCAGATTACCTTGAA
TATAAAAATGAAGAGTTGTCTACTTTTATACTGAATATTGCTGAATAAAG
GTTGAAAATGTAATCCCAGGAAAGATAGATTGACTACAGAGAAAACAAGT
TTCTTAACCAGGAATTGCATGTCTGGGTATAAAATCAAATGTGCTTTTCC
TGTACTGTTCATTGTTATGTTATAAAGCAGACACATGTCCACTATTAACA
GTATTGGCGGCCCTTAGGGTTCAATTACCTAACTCCTCATTATCCATATT
TGAAATTGTTTTATCTTCCCAGGCAACTCAAATCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_e02.g1 MSMg01no154_e02.g1 CHROMAT_FILE:
MSMg01no154_e02.g1 PHD_FILE: MSMg01no154_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:50 2005
         (509 letters)



>mm_chr9_18741090_18741994
          Length = 905

 Score =  841 bits (435), Expect = 0.0
 Identities = 473/489 (96%), Gaps = 9/489 (1%)
 Strand = Plus / Minus

                                                                       
Query: 25  aatgaggtgagttgagaaaa---gagaagacaggcaacaagaagttagataagaagaggg 81
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 905 aatgaggtgagttgagaaaagaggagaagacaggcaacaagaagttagataagaagaggg 846

                                                                       
Query: 82  aaggcaggacaggagaaaaagagaaaagtcaggagaggacaataggagagaaaataaaac 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 aaggcaggacaggagaaaaagagaaaagtcaggagaggacaataggagagaaaataaaac 786

                                                                       
Query: 142 taccaaaaatgagaaggagtgaaaggaacagacggagaaggtaggagcagggagaagatg 201
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 785 taccaaaaatgagaaggagtgaaaggaacagacggagagggtaggagcagggagaagatg 726

                                                                       
Query: 202 tgagaggacatgagagagaagcaaaacatgatttaaaagggagaattgtagcagaaggaa 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 725 tgagaggacatgagagagaagcaaaacatgatttaaaagggagaattgtagcagaagg-- 668

                                                                       
Query: 262 ataaataaataaaacagaaacccccatgtctcatgtatatactgt-gaaaaacttcagat 320
             ||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct: 667 --aaataaataaaacagaaacccccatgtctcatgtatatactgtag-aaaacttccgat 611

                                                                       
Query: 321 taccttgaatataaaaatgaagagttgtctacttttatactgaatattgctgaataaagg 380
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 610 taccttgaatataaaaatgaagagttgtctacttttatactggatattgctgaataaagg 551

                                                                       
Query: 381 ttgaaaatgtaatcccaggaaagatagattgactacagagaaaacaagtttcttaaccag 440
           |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 550 ttgaaaatgtaatcccaggaaagatagactgactagagagaaaacaagtttcttaaccag 491

                                                                       
Query: 441 gaattgcatgtctgggtataaaatcaaatgtgcttttcctgtactgttcattgttatgtt 500
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 490 gaattgcatgtctgggtataaaatcaaatgtgcttctcctgtactgtacattgttatgtt 431

                    
Query: 501 ataaagcag 509
           |||||||||
Sbjct: 430 ataaagcag 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 905
Length adjustment: 10
Effective length of query: 499
Effective length of database: 895
Effective search space:   446605
Effective search space used:   446605
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)