Query= MSMg01no154_i22.b1 MSMg01no154_i22.b1 CHROMAT_FILE:
MSMg01no154_i22.b1 PHD_FILE: MSMg01no154_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:13 2005
(542 letters)
>mm_chr9_20826084_20827025
Length = 942
Score = 1033 bits (534), Expect = 0.0
Identities = 540/542 (99%)
Strand = Plus / Minus
Query: 1 tagtcttaaactctaccttccaagtgacagacagaaatgcagcaaagccagaattccagc 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tagtcttaaactctgccttccaagtgacagacagaaatgcagcaaagccagaattccagc 511
Query: 61 cccagtcttgggtttctaagatcaggtaccagggggaagttcttcaagagggacttccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cccagtcttgggtttctaagatcaggtaccagggggaagttcttcaagagggacttccca 451
Query: 121 aggccacaaggaatgcttggggacttccctctctccagggcagcactggcacatacaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aggccacaaggaatgcttggggacttccctctctccagggcagcactggcacatacaacc 391
Query: 181 acatcctccaaaccacaagctacactgagatttcccgaaggcttctgtccagctaccacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 acatcctccaaaccacaagctacactgagatttcccgaaggcttctgtccagctaccacc 331
Query: 241 aagactgatggcctttaggcttccctgtatcataccacggtgtgacatggtcaacaagta 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 330 aagactgatggcctttaggcttccctgtatcataccacggtttgacatggtcaacaagta 271
Query: 301 aaccaagatgtcagaggcccagaggtcacccagttcctcaggtgctaactccaaagccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aaccaagatgtcagaggcccagaggtcacccagttcctcaggtgctaactccaaagccaa 211
Query: 361 agaaagctgagtataacctctccctggcattccccagtgaggagttgggggcatggttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 agaaagctgagtataacctctccctggcattccccagtgaggagttgggggcatggttca 151
Query: 421 ggggaagagccccttcctaggatacccagagaagctgggtggagagttggcagtgagtgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ggggaagagccccttcctaggatacccagagaagctgggtggagagttggcagtgagtgc 91
Query: 481 tggtctaacaagtgaggccacagatacagaaacagtcattgtagcgtgtgtttcctttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 tggtctaacaagtgaggccacagatacagaaacagtcattgtagcgtgtgtttcctttta 31
Query: 541 ag 542
||
Sbjct: 30 ag 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_i22.g1 MSMg01no154_i22.g1 CHROMAT_FILE:
MSMg01no154_i22.g1 PHD_FILE: MSMg01no154_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:13 2005
(516 letters)
>mm_chr9_20707128_20708043
Length = 916
Score = 924 bits (478), Expect = 0.0
Identities = 504/518 (97%), Gaps = 12/518 (2%)
Strand = Plus / Plus
Query: 2 aggacagccagggctacagagagaaaccctgtctcaaaaaaaaaaaaaaaatttttttta 61
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 208 aggacagccagggctacagagagaaaccctgtctcaaaaaaaaaa------tttttttaa 261
Query: 62 aatttattttgtggggctggagagatggct---tagcagttaagagcactgactgctctt 118
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 262 aatttattttgtggggctggagagatggctcggt-g--gttaagagcactgactgctctt 318
Query: 119 ccagaggccctgagttcaattcccagcaaccacatggtggctcacaaccatctgtaatgg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccagaggccctgagttcaattcccagcaaccacatggtggctcacaaccatctgtaatgg 378
Query: 179 gatctgatgccctcttctggtgtgtactcatatacataaaataaagaaataaatctttaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gatctgatgccctcttctggtgtgtactcatatacataaaataaagaaataaatctttaa 438
Query: 239 aatgatttactttgtgtggttggttagtggagatcagaaaataaccttcaggtattggtt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatgatttactttgtgtggttggttagtggagatcagaaaataaccttcaggtattggtt 498
Query: 299 ctcatcttccatcatttgggctcaagggatctaactcacacattaagcttggctgcaggt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctcatcttccatcatttgggctcaagggatctaactcacacattaagcttggctgcaggt 558
Query: 359 gttgctgtggcccctgccctgtccccgagcatcatgtcattactgaagcttttcccttca 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gttgctgtggcccttgccctgtccccgagcatcatgtcattactgaagcttttcccttca 618
Query: 419 ctgtggctcaaactccccttcagcctggcgccatgcactacccctcaggaggcagatctg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgtggctcaaactccccttcagcctggcgccatgcactacccctcaggaggcagatctg 678
Query: 479 aggcttgagttttttgcctctatgctggctccctttca 516
||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aggcttgagttttttgcctctatgctggctccctttca 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
