BAC Information

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BAC

Clone NameMSMg01-155E05
Chromosome9 (Build37)
Map Location 93,743,930 - 93,744,251
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040114, LOC674371
Downstream geneLOC384967, EG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155E05.T7 (MSMg01no155_e05.b1)MSMg01-155E05.TJ (MSMg01no155_e05.g1)
ACCAG356322AG356323
length748730
length of high quality
(start - end)
425 (47 - 471)326 (74 - 399)
definitionCHROMAT_FILE: MSMg01no155_e05.b1 PHD_FILE: MSMg01no155_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:08 2005CHROMAT_FILE: MSMg01no155_e05.g1 PHD_FILE: MSMg01no155_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAACTGATGCCAATTGAATGGTCTGTCGAGAGGCACCTAAAGA
ATTGTTCAACATCCTTAGTCATCAGGTTTTCGACCTTCTTAATACTGCAA
CCCTTTATTTCAGATCCTCATGTTGTGGTGACCTCCAACCATAACATTAC
TTCTATTGCTAGTTCATAACTGTAATTTTACTATTTTCATGAATAATAAA
AATGCAAATGTCTGTGTTTTCTAGTGGAAACCCCTAGGACACTGCTGCAA
AAGTGTCACTAGACTCCCAAAGGGGTTATGATCCCAGGTATAGAACTTTT
AGGGTGTTGAAAAGCTTTCCTGAAGAGTGGGATTTTTTTCACCTCCCTAT
AGAACATTCAAATTCTCAAGGATCTTCCATTTAAGGTGGAATATTTAATA
TTAGAGGAAATTCTTATACAATCCCATTAAATATGTTCTCATTTATAAAC
CCAGAGATTTCATCATGTTTTTTGATGTGAAAATACCCTTTCCTCTTTTT
AATTTGAACCTTCTTATCACCCGTCTATTTTATCCATTTCCTCCACTCTG
TATAAACTGCAAAACACAACTCTACCCTATATTTTCCTGCCCCATTCTTT
TTCCACTCCCCTTTTTTTTTCTCCCCGCTCCACTTTATTATCGTTTCCCC
ACCTTTATTCCGCCGCATATCTACAATTATCGGTTTTCCCTTTTTTAN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGCCTAACCTTGGAGGAAAAAAGAAC
TTTCTGTATCATCTCTCCAAGAAAAGTACAGAAAAAAAAATGAAAGTTTC
AAAAGTATTACATGAAGCTCTGTATAGCTATTGTCAACTCTTTTGAGAGT
ATATCCGGTATCTATAGCTTATTTATCTAACTATGAAATTAATCATATAT
CAACTACAGTATGGAACTCATTTGGATTTCTCCAGTTTTCCCACTGATAT
CGTTTCTCATTCACAATATAGATAACTGAGGATGATATATTGCATTGAGA
TTTCCTGTTCCCTTAGCTTTCCGCAATCTGAAACAGTTATTCACTCCACA
CTATATAGACTTTAGCATTATTGGAGACTACGGCTTAATCATTTTGTCGT
GCCTTTATCTACTCACCTATGTCATTATCGCTCATGCCCATTCATCCTAT
GTTCTGCTCCATACCCACACAGCTGAGTCCTTTACCCTGCCATTCACCAT
TCTACTTTTCTGTTTTACCGTCATTTACGCCAACTCTTTTCCCCGTGTGT
GCCACATATTCATGTCAGAACCTTCCCGCTTCCTTTCCACCTTTTTACTT
TTTCCCTTTTCCCTTTTTTTACTTTTCCTTTTTTCTTTATCCCACCATTT
TCGTTTTCTTCCATTATTGCCCCTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_e05.g1 MSMg01no155_e05.g1 CHROMAT_FILE:
MSMg01no155_e05.g1 PHD_FILE: MSMg01no155_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:08 2005
         (326 letters)



>mm_chr9_93743730_93744454
          Length = 725

 Score =  594 bits (307), Expect = e-174
 Identities = 319/323 (98%), Gaps = 1/323 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcctaaccttggaggaaaaaagaactttctgtatcatctctccaagaaaagtacagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctgcctaaccttggaggaaaaaagaactttctgtatcatctctccaagaaaagtacagaa 463

                                                                       
Query: 61  aaaaaaatgaaagtttcaaaagtattacatgaagctctgtatagctattgtcaactcttt 120
           ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 462 aaaaaaa-gaaagtttcaaaagtattacatgaagctctgtatagctgttgtcaactcttt 404

                                                                       
Query: 121 tgagagtatatccggtatctatagcttatttatctaactatgaaattaatcatatatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgagagtatatccggtatctatagcttatttatctaactatgaaattaatcatatatcaa 344

                                                                       
Query: 181 ctacagtatggaactcatttggatttctccagttttcccactgatatcgtttctcattca 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 343 ctacagtatggaactcatttggatttctccagttttcccactgatatcatttctcattca 284

                                                                       
Query: 241 caatatagataactgaggatgatatattgcattgagatttcctgttcccttagctttccg 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 283 caatatagataactgaggatgatatattgcattgagatttcctgtttccttagctttccg 224

                                  
Query: 301 caatctgaaacagttattcactc 323
           |||||||||||||||||||||||
Sbjct: 223 caatctgaaacagttattcactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 725
Length adjustment: 9
Effective length of query: 317
Effective length of database: 716
Effective search space:   226972
Effective search space used:   226972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)