BAC Information

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BAC

Clone NameMSMg01-155L14
Chromosome9 (Build37)
Map Location 86,587,796 - 86,723,395
singlet/doubletdoublet
Overlap geneMod1, Prss35, Snap91
Upstream geneIbtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2
Downstream geneC030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706, Tbx18, LOC671731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155L14.T7 (MSMg01no155_l14.b1)MSMg01-155L14.TJ (MSMg01no155_l14.g1)
ACCAG356656AG356657
length789688
length of high quality
(start - end)
213 (134 - 346)392 (57 - 448)
definitionCHROMAT_FILE: MSMg01no155_l14.b1 PHD_FILE: MSMg01no155_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:41 2005CHROMAT_FILE: MSMg01no155_l14.g1 PHD_FILE: MSMg01no155_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,587,796 - 86,588,008)(86,723,005 - 86,723,395)
sequence
NNNNNNNNNAAACTTTTTTTAACCCCCTCCTCCCCACCCCCCCCGACTNC
CCCCCCCCTCTCTATAATTTGCGGNCGCTAATANGACTCACTTCAAAAAC
AGGATNCGCGGAATTCTGTTCTAATAACCAAGACAGGGGACTTTTGAGTA
TATAGCAGATGATGTTAATGCCCCAGGCATCACGCTGACCCCAGGGCTGA
GTAAGTAAAGTTCCTTCTATTGATTGTCCCAAGATGACCCAGATTTGTAA
TCCAACTTGATACACTGCAGGTAAAATGTGTGCACACATTAAGACTGTAC
TTTTCTACCTTTGGTGTAAGATCTTTGTGACAGCATCGTTTCTACAGTGG
GTATCAACTGTCACCGGTTAGCATGATACTCCAAACCCAGTAAAGTATGC
CTTTGCTATGGGATGGTATGGGCCTGGCCTGTCTACCCACTCTTAACAAA
CATTTCAACCTTGACTTAAGACAACCACACAGGCTCTGCTACTCCTGTGA
TCTTGTCCAGGCCACCCATGATTTCGCCCTAAGTCCCGACCGGCACGCTA
ACATCTGACAGCCACAAGTGGCTCTGCCACCCCCGAACCCCACCTTCGCT
CTACTGCAAACAGTCCTCGACCTACAGGACTACACAATTAGTATTACATA
CCATTCACCCTACCAATTACCCCTGATTTCTGAAGGACAAATACGCTCCC
CCACCCCAAACTTGTCCGCCACTACTCCCGCCCACCACCACCCCTTCTAC
CGACCTCCCACCACCCCCATCTACCCATAACCATTACCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCAGCGTGTTACTCTGAATCTCTTTTCTCCTTATGCCTTTGGT
CTTTTCAACATGCCGCCCCTCAGTGGTGCTCATCTTCCTGGCCTCTGCTG
CCTGTCAGCAGTGATGTGTTGTTGGTTCTTTCTCATCCTCTCTCGGTTAG
CTTTATTCCCACTTGGCCATGAATTTGGTGCCCGCCATTCACTTAGCTGA
AAATCAGGCAAGGTCAGCTATGTCATTCTTCCCACTACTGGCCTGACAGC
TGCTAAGCTGACAGTCTGGTTTACTCGGCATTATGCTGATTTCATACATA
GTTGGTATCAAGAGGGTAGTTTCTGTTTAGACTAAAATAATAGCTCTTTG
AGCTGTTTTAATTTCTAATTTGAAAATGTTAGCTTACTAATTGAATCCAA
TAGGGGGAAATTATAGGACCACCGACATTGAACCTTTTTTGTATTAAGGA
CTTTTGGGAATTAGTCTAAGCATATTTCTTCTGCCCTTAGTTTTCCTGTG
AAGCCTTCATTAACATTGTCTGGTTAGCACGCAGGCATACCATAACGGAT
ACCTGATTTGTCCTTGCACCATTTATGCGTTTCTGCTTATCGGAGTGATC
CTTTATTTACATGTTCTCAGTTTTAATCACGGACTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_l14.b1 MSMg01no155_l14.b1 CHROMAT_FILE:
MSMg01no155_l14.b1 PHD_FILE: MSMg01no155_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:41 2005
         (213 letters)



>mm_chr9_86587596_86588208
          Length = 613

 Score =  397 bits (205), Expect = e-115
 Identities = 211/213 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggggacttttgagtatatagcagatgatgttaatgccccaggcatcacgctgacccca 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 caggggacttttgagtatatagcagatgatgttaatgccacaggcatcacgctgacccca 260

                                                                       
Query: 61  gggctgagtaagtaaagttccttctattgattgtcccaagatgacccagatttgtaatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggctgagtaagtaaagttccttctattgattgtcccaagatgacccagatttgtaatcc 320

                                                                       
Query: 121 aacttgatacactgcaggtaaaatgtgtgcacacattaagactgtacttttctacctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttgatacactgcaggtaaaatgtgtgcacacattaagactgtacttttctacctttg 380

                                            
Query: 181 gtgtaagatctttgtgacagcatcgtttctaca 213
           |||||||||||||||||||| ||||||||||||
Sbjct: 381 gtgtaagatctttgtgacagtatcgtttctaca 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no155_l14.g1 MSMg01no155_l14.g1 CHROMAT_FILE:
MSMg01no155_l14.g1 PHD_FILE: MSMg01no155_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:41 2005
         (392 letters)



>mm_chr9_86722805_86723596
          Length = 792

 Score =  741 bits (383), Expect = 0.0
 Identities = 389/391 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagcgtgttactctgaatctcttttctccttatgcctttggtcttttcaacatgccgc 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttcagcttgttactctgaatctcttttctccttatgcctttggtcttttcaacatgccgc 532

                                                                       
Query: 61  ccctcagtggtgctcatcttcctggcctctgctgcctgtcagcagtgatgtgttgttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ccctcagtggtgctcatcttcctggcctctgctgcctgtcagcagtgatgtgttgttggt 472

                                                                       
Query: 121 tctttctcatcctctctcggttagctttattcccacttggccatgaatttggtgcccgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tctttctcatcctctctcggttagctttattcccacttggccatgaatttggtgcccgcc 412

                                                                       
Query: 181 attcacttagctgaaaatcaggcaaggtcagctatgtcattcttcccactactggcctga 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 411 attcacttagctgaaaatcaggcaaggtcagccatgtcattcttcccactactggcctga 352

                                                                       
Query: 241 cagctgctaagctgacagtctggtttactcggcattatgctgatttcatacatagttggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cagctgctaagctgacagtctggtttactcggcattatgctgatttcatacatagttggt 292

                                                                       
Query: 301 atcaagagggtagtttctgtttagactaaaataatagctctttgagctgttttaatttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 atcaagagggtagtttctgtttagactaaaataatagctctttgagctgttttaatttct 232

                                          
Query: 361 aatttgaaaatgttagcttactaattgaatc 391
           |||||||||||||||||||||||||||||||
Sbjct: 231 aatttgaaaatgttagcttactaattgaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)