BAC Information

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BAC

Clone NameMSMg01-155P02
Chromosome9 (Build37)
Map Location 59,398,029 - 59,556,032
singlet/doubletdoublet
Overlap geneHexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2
Upstream geneCd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik
Downstream geneSenp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155P02.T7 (MSMg01no155_p02.b1)MSMg01-155P02.TJ (MSMg01no155_p02.g1)
ACCAG356810AG356811
length742737
length of high quality
(start - end)
488 (70 - 557)382 (58 - 439)
definitionCHROMAT_FILE: MSMg01no155_p02.b1 PHD_FILE: MSMg01no155_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:57 2005CHROMAT_FILE: MSMg01no155_p02.g1 PHD_FILE: MSMg01no155_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,555,545 - 59,556,032)(59,398,029 - 59,398,408)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAAAACAGGATCCGCGG
AATTCAGGTCTTCATGCCTGGACAGACAAGTACTGTGCTGACTGAGGCAC
CTTCCCAGCCCCTCAAGGTCCCCTTGGTAGCCAGGTTATATCCCAACAAT
TCCCACCCTTCCCAGTCTGGACTTATCTCTGATTGGGAAGGGGCCTCACC
TGCCATCATCTGGAGGCTCCTGGACCTTTCCTGGTTTCTCCGTGCAGGGC
ACATGGCTCTTCAGAGGTGCCATCTTCCCGTGCATTTGTTGGTTGCTAGA
GGGAAATGTGTCCATGTTAGAAAGAGAAATTTGGGGGCATCTTTCCCTAT
TAGCTGCACTGTGTCCAGGGCAGCTGCTCTGTTCTCTACCCTTTGATGTA
CAGGGTAGTTTAAGATGTCATCATTTGGAGCCACCTTTCAAATGCTGTGC
CCATTAACCCAGAGACCAGCATTCTGAGAGGGAACTCATTTCCCCACATC
TAAACACTACTCTGGGTATAGTAGGCTTTTCTCACCTCTGCCAATCTGAT
AGGCAGAAAAACATCATCTTCATTTGCATATCATCACTGATAGGTGCCTC
CCACACCACACTGCCTAGAAACCTAAAGCTCGGTTAATGCCTGGCCCAGG
GGGGAAAATGTCAGCCTGTCAACCTTCTAGTCAACTAGCAACTGCTAGTC
CGGGCAGAGTGTAGCCTCCTGCCCCCACCCAGGAGCAAGGAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGTCCCAGCCGCCCAGACCGTTTTCTCTCCATGTTCTCTAAGG
CAGGAACGCCAGAGTAAGAGTGGGTGTTTAAGATGATGTGCACTTGAGAC
CGGGAAGATGGCAAATACTTTAGTGCTGGGAGGAAAGAGGCAGTGGGGAG
AAATCACTTGAAGATAATTTATATGACAGGAGCCTGAGGGGAAGTCCAGA
ATACAGGCGAAGGGAAATAAATGTCTTCCATAGAGGAAAGGGAGAAGAAG
GTAAAGTCAGATGCAGCGTTGCAGGCGTTCTGCGAGACTGGGAAAGGAAA
GGAACGTGGAATGGAGCTCTCAAGCTGCTGAAGTAAGGGAGGTGGAACCA
GGCATAGTCTTGAGGAAGGTGGCACAGGCTTGAAGTACATGTTCCAGAGA
ATACAAGGGGACCATACAGGGCATAGCAGACAACTTTCTTGGGTTTTTGC
TGCTGTTTGATGTATGTGTGGCATGTGTCTGTGCGTGTGCTTGTAAACCC
CCCAGACAGATGCCCCATGCCATTGGCAGCTGCTCGCCTCCTCCTTCGAA
TGAGTCTCCTTGAACGCCCACACTCGCTGATTGGCCACGCTGCCCTGCCC
CCTAACCCCCCCCGAATCCCCCCGCCCTTTGGCCCCCGGCCCTGTGAACT
CAAGTCCGCCTGGCCTTTTTCTGGCCCACTGCCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_p02.b1 MSMg01no155_p02.b1 CHROMAT_FILE:
MSMg01no155_p02.b1 PHD_FILE: MSMg01no155_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:57 2005
         (488 letters)



>mm_chr9_59555345_59556232
          Length = 888

 Score =  944 bits (488), Expect = 0.0
 Identities = 488/488 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggacagacaagtactgtgctgactgaggcaccttcccagcccctcaaggtccccttggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ggacagacaagtactgtgctgactgaggcaccttcccagcccctcaaggtccccttggta 629

                                                                       
Query: 61  gccaggttatatcccaacaattcccacccttcccagtctggacttatctctgattgggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gccaggttatatcccaacaattcccacccttcccagtctggacttatctctgattgggaa 569

                                                                       
Query: 121 ggggcctcacctgccatcatctggaggctcctggacctttcctggtttctccgtgcaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggggcctcacctgccatcatctggaggctcctggacctttcctggtttctccgtgcaggg 509

                                                                       
Query: 181 cacatggctcttcagaggtgccatcttcccgtgcatttgttggttgctagagggaaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cacatggctcttcagaggtgccatcttcccgtgcatttgttggttgctagagggaaatgt 449

                                                                       
Query: 241 gtccatgttagaaagagaaatttgggggcatctttccctattagctgcactgtgtccagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtccatgttagaaagagaaatttgggggcatctttccctattagctgcactgtgtccagg 389

                                                                       
Query: 301 gcagctgctctgttctctaccctttgatgtacagggtagtttaagatgtcatcatttgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gcagctgctctgttctctaccctttgatgtacagggtagtttaagatgtcatcatttgga 329

                                                                       
Query: 361 gccacctttcaaatgctgtgcccattaacccagagaccagcattctgagagggaactcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gccacctttcaaatgctgtgcccattaacccagagaccagcattctgagagggaactcat 269

                                                                       
Query: 421 ttccccacatctaaacactactctgggtatagtaggcttttctcacctctgccaatctga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttccccacatctaaacactactctgggtatagtaggcttttctcacctctgccaatctga 209

                   
Query: 481 taggcaga 488
           ||||||||
Sbjct: 208 taggcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_p02.g1 MSMg01no155_p02.g1 CHROMAT_FILE:
MSMg01no155_p02.g1 PHD_FILE: MSMg01no155_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:57 2005
         (382 letters)



>mm_chr9_59397829_59398610
          Length = 782

 Score =  688 bits (356), Expect = 0.0
 Identities = 374/380 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcccagccgcccagaccgttttctctccatgttctctaaggcaggaacgccagagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcccagccgcccagaccgttttctctccatgttctctaaggcaggaacgccagagtaa 260

                                                                       
Query: 61  gagtgggtgtttaagatgatgtgcacttgagaccgggaagatggcaaatactttagtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtgggtgtttaagatgatgtgcacttgagaccgggaagatggcaaatactttagtgct 320

                                                                       
Query: 121 gggaggaaagaggcagtggggagaaatcacttgaagataatttatatgacaggagcctga 180
           |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gggaggaaagaggcagtgggaagaaatcacttgaagataatttatatgagaggagcctga 380

                                                                       
Query: 181 ggggaagtccagaatacaggcgaagggaaataaatgtcttccatagaggaaagggagaag 240
           ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggaggtccagaatacaggcaaagggaaataaatgtcttccatagaggaaagggagaag 440

                                                                       
Query: 241 aaggtaaagtcagatgcagcgttgcaggcgttctgcgagactgggaaaggaaaggaacgt 300
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggtaaagtcaggtgtagcgttgcaggcgttctgcgagactgggaaaggaaaggaacgt 500

                                                                       
Query: 301 ggaatggagctctcaagctgctgaagtaagggaggtggaaccaggcatagtcttgaggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaatggagctctcaagctgctgaagtaagggaggtggaaccaggcatagtcttgaggaa 560

                               
Query: 361 ggtggcacaggcttgaagta 380
           ||||||||||||||||||||
Sbjct: 561 ggtggcacaggcttgaagta 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)