BAC Information

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BAC

Clone NameMSMg01-156A18
Chromosome9 (Build37)
Map Location 10,483,641 - 10,605,337
singlet/doubletdoublet
Overlap genenone
Upstream geneCntn5, LOC665154, LOC100039970
Downstream geneLOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156A18.T7 (MSMg01no156_a18.b1)MSMg01-156A18.TJ (MSMg01no156_a18.g1)
ACCAG356887AG356888
length753760
length of high quality
(start - end)
319 (45 - 363)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no156_a18.b1 PHD_FILE: MSMg01no156_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:05 2005CHROMAT_FILE: MSMg01no156_a18.g1 PHD_FILE: MSMg01no156_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,605,022 - 10,605,337)(10,483,641 - 10,483,927)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGTAGTTTTAGGTTTTGAAATTGAAAGCAACAATTCTTGTGCTT
TTCAATCTACAGGGGGGATAAGATTAGATAGCTAGGAAAACATCTTTTGT
GATTAACTTCTGCATGCATGGTCAACTGAAGTCTGATCAAAAGTAAGAAA
AGCAGACGCAAAACAGAGCAGACATGCCAGACATCTGTGCTAAACTTGGT
TACCTTGTGAGAACTTGATATACTGTTGGCAGGGGGTCCTACCTAACAGG
TCACAAGTTTCAAAGAAGAATAACTCTAAAGGGAGAGTTTGCTTTGCTGT
TTGGGAAGGTAATTGTTAATTCCCCGCACCGCCTGATGTGACTCAAAAAT
ACTATTTGTTCCTGGGTTATTTTTAACCAGCACAGTGTATATGAATTGTG
TTATTGGATCCTATAGGATTCCATGTAGATAGGATTTATTTTCTTTTTCT
TGCTTTGGGAAATTACAATGTAGGGTGCTGCAGATAGTTTGGGAATAACT
ACAGCTAGATGATGTCTGATATTGTACTCACCAGTGGGTGTTTCTGCAAA
CAGAAAATTATTTTCAATGCTGGAACAGATAGACCAAAATATTAGTCATC
TCCAGATCACCACTTTCAGATCTTCACATATGCTTTCCAATTGCTTGTTT
CTAAGAAGATTTCTGTTCATTGATGTTGATTTCTAGATCAGGCTGCTCAT
ATN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGACTTACAACAGCTCTGCCACT
CTAGTTCTAAAACAAAGAAGACAGAGGGTCAGTCTTTTAAGCAAGGTCAA
AACTAAATTAAAGATAATTAGGCAACCAACCAAGCTTTGCCATATACAAG
CTCCTCATTATCCAGTATCCAATTCATCTGGAAAAAACATTGGAAAAAGG
TCAAAACAAGGAACAGAGTTTTAATTTGGTATTGATAAAAAGTAAAATTC
CGCTGTCAAGAATACAAGTATAATATGTAAGCAAAAAAGTAGGTGTGGTT
GACCTAGGGCATTGCTATTCTTACACCCCCCACCGCCCTCTGGAGTGTGC
ATTATCTCAGGTTTAGACCTATTAGTGAGAGAAAAATAAATAAGTATATT
TGCTTAAGTTTGGTATTGTGGTATTGTTCAGAGTGGAACAGGAACAAAAG
GACCAGGGTGTAGAAATGACTAATCTAGGGATTATTTAATAAGCCTACGA
TGCTTCATAATTAAAAAAAAAAAAAAAAAACTGAAGAAGAAGCTGGGAGG
TGGTGGCACACGCCTTTAATCCCAGTATTCAGGAGGCAGAGGCAGGTGGA
TTTCTGAGTTCGAGGCCAGCCTGTTCTACAGAGGGAGTTCCAGGACAGCC
AGGACTATACCGAAAAACTCTGTCTCGAAAAACTAACTACCAACCAAAAA
AAAGTGACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_a18.b1 MSMg01no156_a18.b1 CHROMAT_FILE:
MSMg01no156_a18.b1 PHD_FILE: MSMg01no156_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:05 2005
         (319 letters)



>mm_chr9_10604819_10605537
          Length = 719

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaggtagttttaggttttgaaattgaaagcaacaattcttgtgcttttcaatc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggaattccaggtagttttaggttttgaaattgaaagcaacaattcttgtgcttttcaatc 460

                                                                       
Query: 64  tacaggggggataagattagatagctaggaaaacatcttttgtgattaacttctgcatgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 459 tacaggggggataagattagatagctaggaaaacatcttttgtgattaacttctgcatgt 400

                                                                       
Query: 124 atggtcaactgaagtctgatcaaaagtaagaaaagcagacgcaaaacagagcagacatgc 183
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 399 atggtcaactgaagtctgatcaaaagtaagaaaagcagactcaaaacagagcagacatgc 340

                                                                       
Query: 184 cagacatctgtgctaaacttggttaccttgtgagaacttgatatactgttggcagggggt 243
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 339 cagacatctatgctaaacttggttaacttgtgagaacttgatatactgttggcagggggt 280

                                                                       
Query: 244 cctacctaacaggtcacaagtttcaaagaagaataactctaaagggagagtttgctttgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cctacctaacaggtcacaagtttcaaagaagaataactctaaagggagagtttgctttgc 220

                           
Query: 304 tgtttgggaaggtaat 319
           |||||||| |||||||
Sbjct: 219 tgtttggggaggtaat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no156_a18.g1 MSMg01no156_a18.g1 CHROMAT_FILE:
MSMg01no156_a18.g1 PHD_FILE: MSMg01no156_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:05 2005
         (287 letters)



>mm_chr9_10483441_10484127
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacttacaacagctctgccactctagttctaaaacaaagaagacagagggtcagtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacttacaacagctctgccactctagttctaaaacaaagaagacagagggtcagtctt 260

                                                                       
Query: 61  ttaagcaaggtcaaaactaaattaaagataattaggcaaccaaccaagctttgccatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaagcaaggtcaaaactaaattaaagataattaggcaaccaaccaagctttgccatata 320

                                                                       
Query: 121 caagctcctcattatccagtatccaattcatctggaaaaaacattggaaaaaggtcaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagctcctcattatccagtatccaattcatctggaaaaaacattggaaaaaggtcaaaa 380

                                                                       
Query: 181 caaggaacagagttttaatttggtattgataaaaagtaaaattccgctgtcaagaataca 240
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 381 caaggaacagagttttaatttggtattgataaaaagtagaattctgctgtcaagaataca 440

                                                          
Query: 241 agtataatatgtaagcaaaaaagtaggtgtggttgacctagggcatt 287
           |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 agtataatatgtaagcaaaaaaataggtgtggttgacctagggcatt 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)