BAC Information

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BAC

Clone NameMSMg01-156G03
Chromosome9 (Build37)
Map Location 31,208,559 - 31,208,677
singlet/doubletsinglet
Overlap geneNfrkb
Upstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10
Downstream geneTmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156G03.T7 (MSMg01no156_g03.b1)MSMg01-156G03.TJ (MSMg01no156_g03.g1)
ACCAG357139AG357140
length787908
length of high quality
(start - end)
309 (37 - 345)124 (118 - 241)
definitionCHROMAT_FILE: MSMg01no156_g03.b1 PHD_FILE: MSMg01no156_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:30 2005CHROMAT_FILE: MSMg01no156_g03.g1 PHD_FILE: MSMg01no156_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATA
GATCAGAATGGCCTGTGAGCACATCTGGGGACTGGGGTTGTCATAATTAC
AAATTTATACAGGATTCCCAGCCCACTATAAACAGTTACACCCCTAGGCA
GATGGCCCTGGGAGTGACAAGACAGCTAACTAAGGAACTGAAGACATGGC
TCAGAGGTTAAGGCTACTTGCTACTCTTACAGAGGACTGAGTTTAGTGTC
CAGGACCCTTACTGGACGTCTCACAACTACCCTTAGCTCCAGCTTCAGGG
GATCTGATGACTTTTTCTGGCCTCTACAGTCACCAGGCACTTATGAGGTC
TTTTTTTTTTTACCCCCACCCACCCCCCACATATAAGATGATACACACTT
ATAAGACAACCCTCTCCACAATATAAACAAATTATAACCCTGGTGCGGCT
CTCCTATAACTATACATATAAGCTTTCATATACACATCAAACCCACACCA
GACTCCCTCTTCTCCATTTATTTCTACACTTCTTTCTCCCCTCTTGTACC
TTGTTACCATTTTTCCCTCACATCTATACACTATATATCTCTCCCTTCTT
CTTCTCTTTAGTTGCGCCTTCTTTTCCTCTTAACCCAGAGGATGAGCAAC
ATCTTTTTACAACCCTTACCGCTCTACTTTTCTAACCCGATCTTCTATTA
TATTTTTTTTTTTATCTCTACATCTTTATTATTATGCTAATATAACTACT
CAATTAACTCTTAACGCTATATAATTTCACATTACCA
TTTTTTTTTTTTTTTTCTTTACTACCATCCNNCCTCTATTTTNNNTCAAT
GCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTTTCCCCGAAAATCAAGAGAAAACCCAGCAGTGGAATTGCTTGGTAA
GTAGTCTAGTACTCCGCAAGAGGTTTGTTTTGTTTTGCCCACCACCCCCC
CACCCCCGCTTTTTTTTTTTTTTCCTTGATGAGAGGAATCAATGATGGGA
AGATTGTTACTGATAGGAGTGCCTAGAGAGCCAGTCAAGCAGGTTATATG
TGCCTTACCGTTTCTGAGGAGGAGCTATATCTCTTGTTAAAGTAGGGGGA
AGGGAGACAGAGTTTTTTTTTGCAGAGCGCTACACATCCTCTGCCCGTTG
TGGAGTTTTGTTTAGCTTCCCCCCATGATGTGCCGAGAGTCACCCCTGTA
CCCGTAGAGTGTTCTTGTCGCCCCCAGTTTACCAGCTGTACTCCTTCTTC
TTTGTTCTTAAATGTTGAGCTCCCTTCTGTTTTATTGCCTTGCTTTCTCC
TTCCTCCTCTTTTCTGGTTTCTTTGTTTTACTTGCGTCTTGCTCTTGCTT
TTCTATTCACCACCTCTTTCTCTTACCTTTTATTATTTTTTTTTTGCTTT
CCCCTCGCCTTTATATTACCATCAAGTGTCCTTATACTTTATTATCTTCT
TACTCTTTTTTTTTATTCTCGCCTTACTAGTGCTTTCTTTGCACTTTCTT
TCTTCCTTATATTATTTGCGCCTTCTCTCTTTGAAGCTTCTTCTCTTTAA
GATTTATCCGTCTCCCCCTATGCCCCACTCGCTCCTCATCATTTTTTTCT
CCAAATTTTATATCAATCATTACATCATTTTGTTCTAATTTCATTTAATT
TTCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_g03.g1 MSMg01no156_g03.g1 CHROMAT_FILE:
MSMg01no156_g03.g1 PHD_FILE: MSMg01no156_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:30 2005
         (124 letters)



>mm_chr9_31208359_31208877
          Length = 519

 Score =  172 bits (89), Expect = 6e-48
 Identities = 115/125 (92%), Gaps = 7/125 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagaaaacccagcagtggaa-ttgcttggtaagtagtctagtactccgcaagaggttt 59
           |||||||||||||||||||||| |||||||||||||||||||| |||  | |||||||||
Sbjct: 201 aagagaaaacccagcagtggaaattgcttggtaagtagtctag-actttg-aagaggttt 258

                                                                       
Query: 60  gttttgttttgcccaccacccccccacccccgcttttttttttttttccttgatgagagg 119
           ||||||||||||| |||   |||||||||||||||||||||||||| |||||||||||||
Sbjct: 259 gttttgttttgcctacc---cccccacccccgcttttttttttttt-ccttgatgagagg 314

                
Query: 120 aatca 124
           |||||
Sbjct: 315 aatca 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 519
Length adjustment: 8
Effective length of query: 116
Effective length of database: 511
Effective search space:    59276
Effective search space used:    59276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)