BAC Information

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BAC

Clone NameMSMg01-156M08
Chromosome9 (Build37)
Map Location 76,694,984 - 76,695,292
singlet/doubletsinglet
Overlap genenone
Upstream geneBmp5, EG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
Downstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156M08.T7 (MSMg01no156_m08.b1)MSMg01-156M08.TJ (MSMg01no156_m08.g1)
ACCAG357425AG357426
length807828
length of high quality
(start - end)
313 (100 - 412)32 (127 - 158)
definitionCHROMAT_FILE: MSMg01no156_m08.b1 PHD_FILE: MSMg01no156_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:59 2005CHROMAT_FILE: MSMg01no156_m08.g1 PHD_FILE: MSMg01no156_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATTTTTCCCCGCCCCCCTCCCCTTCTCTNANATNNTACATNTTNNNNA
ATAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTTTTTAGAAACAGAGGTAAGATACTGAGCCAAAGTCCAG
GCAAGAACATACTGTTATTTTTCACAACATGAATATCAGGGTGATCTTAT
GTAATGATAACTTGACTACTGAGAATTCATTTGCACCAAAACATACTTCA
CTATGATGGGCAAAAGTTCTTCCACATGCTGTGTAGTAAATTCTCTTAGA
CAACATTTTATACACATTGCTGCTTCTCCAACATTCAATTTAAAAACTGA
AGGGAATTAGGAACAGCGACTGCACTGTTAAAATCCTGAGGTGTGCAGGA
TTGAAAGAGACAGCTTTTTATTACGCCCCCCACCACACACTACAGCAGAC
ATGTAATATTGGACTTGTAACACTACAATTAAAAGATCAACACTGTATGA
AAAGGAGTAAGTCTAATTTCTTAAAGGAAGACATTGAAAATATTGAGAAA
GAGAGAAATCCAAGTCACTGCCTTTATCTGTTAACCTGCTGAAAGCTATT
GAGAAATAATATCTCAAGATGACTTGAAAAAGTATTTTTCATGTTAGCCT
ATATTGTAAGCATGCTGTGTCCTCTGATGAACTACGTAAAGGGCAAAAGA
ACATAATAAAGTATAACCCCTATATATGAAATTCTAATAAGTTACTTTAT
ACAGGAACTGTAAAATATTAAAAAAGTATAGCGGAACTTACCTAGTAGAT
AGTCCCA
TTTTTTTTTTTTTTTTTTCGGTNCATGGCTACNNTGNNTTCTTNNACACT
ACTATGCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAAATCTGTACCCCATTT
TTTAATTGGAATATTTGATTTGTTGATGTCTAGTTCCTTGCGTTCTTTAT
ATATTTTGAATATCAGCCCTCTGTCAAATGTGGGGTTCGGGAAAACCTTT
TCCCATTCTGAAGAATGCCATTTTATTCTTTGAAGGCTATCCTTTGCTTA
CAGAAGTTTTTCAGCTCTCACAAAATGAAACCCTTTCATAAAATCTCATT
TATTAGTTGTTGATCTTAGGGCCTTTGCAATTGGTTTTCTGGCCAGGAAG
TTGGCCCTGTGTTTTTGTTCTCCCCCCCCCCCCCCCCATTTTTCTTCAAT
AAGGTTTAGGGTATCTGATTTTATGTAAAGAAAATTGAACCCCTTGAACT
TGAGGTTTGGGCACGCTGATTGAAAATGAAACTTATTTGCATCCTTCTAC
TTGCAAACTTTTTATTAAATCCCAATCATTTATGGAATAGGCTTTCTCTT
TTCCCCGGTATAAATTTGGCTTCTCTGTACAAATTCAATTGTCCTATGTG
GGGGGATTTTTCCTCTCGTAATGTCTGAATTTGATTCCCTTCGTACCATT
ATGCGAATTATTTTGAGAATGGTTTTTTATTACCAATATGCCCTGGTCTA
ATTTCTCTTGTATTTCTTTTGCATTTCCTATAATCTATTTATCTTTCTCT
TCCTTTAAATTTTCCCTTTGTTACAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_m08.b1 MSMg01no156_m08.b1 CHROMAT_FILE:
MSMg01no156_m08.b1 PHD_FILE: MSMg01no156_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:59 2005
         (313 letters)



>mm_chr9_76694780_76695492
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttttagaaacagaggtaagatactgagccaaagtccaggcaagaacatact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcactttttagaaacagaggtaagatactgagccaaagtccaggcaagaacatact 454

                                                                       
Query: 65  gttatttttcacaacatgaatatcagggtgatcttatgtaatgataacttgactactgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gttatttttcacaacatgaatatcagggtgatcttatgtaatgataacttgactactgag 394

                                                                       
Query: 125 aattcatttgcaccaaaacatacttcactatgatgggcaaaagttcttccacatgctgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aattcatttgcaccaaaacatacttcactatgatgggcaaaagttcttccacatgctgtg 334

                                                                       
Query: 185 tagtaaattctcttagacaacattttatacacattgctgcttctccaacattcaatttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tagtaaattctcttagacaacattttatacacattgctgcttctccaacattcaatttaa 274

                                                                       
Query: 245 aaactgaagggaattaggaacagcgactgcactgttaaaatcctgaggtgtgcaggattg 304
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 273 aaactgaagggaattaggaacagcgactgcactgttaaaatcctgaggtgcgcaggattg 214

                    
Query: 305 aaagagaca 313
           |||||||||
Sbjct: 213 aaagagaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)