BAC Information

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BAC

Clone NameMSMg01-156P16
Chromosome9 (Build37)
Map Location 7,962,052 - 7,962,368
singlet/doubletsinglet
Overlap geneYap1
Upstream geneDync2h1, LOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3
Downstream geneEG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6, Pgr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156P16.T7 (MSMg01no156_p16.b1)MSMg01-156P16.TJ (MSMg01no156_p16.g1)
ACCAG357579AG357580
length744741
length of high quality
(start - end)
321 (45 - 365)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no156_p16.b1 PHD_FILE: MSMg01no156_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:14 2005CHROMAT_FILE: MSMg01no156_p16.g1 PHD_FILE: MSMg01no156_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCACCCAGGCTCAGGCTGGAATGCTAATTTGGACCTAGATTTCTT
AGGTTTAAAAAAATGAAACACTTACCCAAAAAACAGCAAAAACCCAGCAA
GGAAAGAAGTTGGGTATACAGCATTTGCTACTAAAGGTGTTGCAGATTCT
GTTTTGTTTTTTTAAGTTTTCTTAAGTCTCCCTAGCCCCCACACTAACAT
CAAAATAACCACAAAGGTTCTGAGTAAACCTTTACCAAAACGAGGGTCCA
GCCTTGGGTCCAGCCAGGATGTGGTCTTGTTCTTATGGTTTATGTAGTAA
ACTTCTCCATCCTGATTCATGGCTTGCTCCCCTCCATCAGGAAGAGGTCC
TACAAAACAGAAATCACACCACCCGACTTTGATCTGGTGCACCTCAAAAA
GTTGAGAGGTGCTCCTTTAAAAAAGAACAGACACAATCAGATAAAAAGCA
GTGCATTAAGACAGATTACAGCCTATGTAAGAGAAAATAAGGCAGGGCCA
CCTAACTGATTATCCACCAGGAAAATCAAATCATTGTGAAAATCAAATCA
GTAGTGAAATTGGCATCCCCAAAGGCACAGGTGAGAACTTTAAGTGGTCA
GACTAAAAGCACACTTTAGCTGACAGCCACGGTCCATTATTTACGGGACT
ACCTCACACCAAGAAACCCAGACTATAGATTCAACTCCCAGTAN
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTAGCCTCC
AACTCAGAAATCTACCTGCCTCTGGGATTAAAAGCGTGCGCCACCACACC
CGGCTTGGCTTTCTATTATTTATGTTGTTATTGAAGATCAGCCTTAGTCC
ATGGTGATCTGATAGGATGCATGGGATAATTTCAATATATTTGTACCTAT
AGAGGCCTGTTTTGTGACCAAATATTTGGTCAATTTTGGAGAAAGTACCA
TGAGGTGCTGAGAAGAAAGTATATCCTTTTGTTTTAGGATAAAGAGATAT
CTGTAGATATCTGTTATCCTTTCCCCCCCCCCCTCCTGTTAGTTTCACTG
TGTCTCTGTTTAGTTTCCGCCCCCAGAATCTGAACATTAATGAGAGTGAG
ATGTTGAAGTCTCCCACTATTATTATGTGAGGTACAGGGTGTGCTTTGAG
CTTTACTATAGTTTCTTTAATGAATGTGGATGCCCTGGCATTTGTAGCAT
AGATATTCAGAATTGAGAGTTCATCTTGGAAATTTTTACCTTTGATGGGT
ATGAACTGCCCCTCCTTGTCTGTTTTGATAACTTTGGGTTTAAAGCCAAT
TTTATTCCATATTACAATGTCTACTCCAGCTTGTTTCTTCAGACCATTTG
CTTGGAAAATTGTTTTCCAGCCTTTCACTCTGAGGTAGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_p16.b1 MSMg01no156_p16.b1 CHROMAT_FILE:
MSMg01no156_p16.b1 PHD_FILE: MSMg01no156_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:14 2005
         (321 letters)



>mm_chr9_7961848_7962568
          Length = 721

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccacccaggctcaggctggaatgctaatttggacctagatttcttaggtttaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccacccaggctcaggctggaatgctaatttggacctagatttcttaggtttaa 264

                                                                       
Query: 65  aaaaatgaaacacttacccaaaaaacagcaaaaacccagcaaggaaagaagttgggtata 124
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaatgaaacacttaaacaaaaaacagcaaaaacccagcaaggaaagaagttgggtata 324

                                                                       
Query: 125 cagcatttgctactaaaggtgttgcagattctgttttgtttttttaagttttcttaagtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagcatttgctactaaaggtgttgcagattctgttttgtttttttaagttttcttaagtc 384

                                                                       
Query: 185 tccctagcccccacactaacatcaaaataaccacaaaggttctgagtaaacctttaccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccctagcccccacactaacatcaaaataaccacaaaggttctgagtaaacctttaccaa 444

                                                                       
Query: 245 aacgagggtccagccttgggtccagccaggatgtggtcttgttcttatggtttatgtagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacgagggtccagccttgggtccagccaggatgtggtcttgttcttatggtttatgtagt 504

                            
Query: 305 aaacttctccatcctga 321
           |||||||||||||||||
Sbjct: 505 aaacttctccatcctga 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)