BAC Information

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BAC

Clone NameMSMg01-157A18
Chromosome9 (Build37)
Map Location 117,685,989 - 117,686,279
singlet/doubletsinglet
Overlap genenone
Upstream geneRbms3
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4, Itga9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157A18.T7 (MSMg01no157_a18.b1)MSMg01-157A18.TJ (MSMg01no157_a18.g1)
ACCAG357629AG357630
length800753
length of high quality
(start - end)
252 (31 - 282)289 (62 - 350)
definitionCHROMAT_FILE: MSMg01no157_a18.b1 PHD_FILE: MSMg01no157_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:19 2005CHROMAT_FILE: MSMg01no157_a18.g1 PHD_FILE: MSMg01no157_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGAATGGAG
ATGGAAGGTGGGTGCTAAGTCAGACTTTTAGCTAAGGGGCTCCTCACAAG
TGGTAGCTTCTGGGAGAAAGAGTCAGTTTCCTTCACAGATGTAGCCAGGG
CAGGTCGACAGCACCCTGCAGTGATGGCCACACATACCAGTGCGTAAGGC
ATCAACTGATTAAGAAATAAGAGAGAAGGTAAAGTTGGGTGGATAGAAAG
GTGAGGTGGATCTGGAAGGAGTAGGGGGCAGNGAATTTNCTNNNNNNNNN
TNGNNNNGTTTTTTTTTTGAGGGTGTGGGGTTATGAAGAAAAGAAAATTT
TTTTTTTTTTCCCCCCCCACCCCCCCTTATTTTTTATTTGATAATTTGAG
GTTGCCCCCCCTAAAAAAAAAAAAAAAAAAAGGTGGGGGGCGGGCTTCTT
GCGCCCTGTATCCCCTTTCTCATTACATTTTCTTATATCCCCCCCACCCT
TCCTCTTTTTCCTCCTCCCCCCCTCCTTTTTCCTTTTCTACCCTCTCGTC
CCTTATCACTTCTTTTTTCCTCATATTATCTCCCACCTCCCTTTATACCA
CCTTCCTCTTTTTTTTTATTTTTCCCTTTACTCTTTTCTTCTCCCCCTTC
TTAGGTCTTTTTTCCTCTTATTCTTCCTTCCCCTTTTTCTCTTATTACTC
ATCATCTCCCCAATATCATCCTATCCTTCTTTCATCCACATTGTTCTCTT
CCCCTTTTCCCTTCAATCTACCTATCCTTTCTCTTTTTTCCGTCCGCCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAGGTTTCTTGTGCCTGGCAAATACTTGGCCAATGGCACC
AAATTCCCAGCCCAGCACACGTGTTGATAGTGCTTACTTTACCTAAAGAG
ACATAAGGAAATCCTGTGCAAAGTTGGGGTGCCAATAAGCCTATTCATAA
GAACAGTGTTTTGGGTTCTAGAATATGCCAGGGCAGTCTTTTAGAGGAAA
GGCAAACAATTATGTCCTTGGGCTTAAGGACTTCAACTAGAGGCAAAGGA
AATGTTGGGGAGGGGAGAGTCAGGTTGGAAGCCTTGAGTGAGCTAAGAAA
AGATTTTTTCACCCCCCGCCCCCCCGGCTGTGTCTGAGACAAAGCAGAAA
ACCTGGGGGTGGGGGGAGGAAGAAAAACCGTCAGCCGTGGATACCAGGAA
GCAGAGATCAATAACTCTGAGTCATACAATCAGGAAGGCACTGAACATGT
GGACGGCACAGCAGACAAGGAAGCAATGACCTTGTGTTGAGCCAACACCC
AAAGGAAAGCACCAAACCATGTGCTGCAGACTGTGTGCGGGAGACCCTGG
CGCTCTGACAAGCTTGCCAGCCCCTGCTGGTGTTGGCCTTGCCTGTGGTG
CTGTTTACTCTGTTTGTAGGAAGCCTCTACTCTAAAAAGCTTCCGAGGAC
TCATTCGAGATTTTGTCTTATCCAGGTTTCCTATTCCTGCACCATCCTAT
TGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_a18.g1 MSMg01no157_a18.g1 CHROMAT_FILE:
MSMg01no157_a18.g1 PHD_FILE: MSMg01no157_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:19 2005
         (289 letters)



>mm_chr9_117685789_117686479
          Length = 691

 Score =  505 bits (261), Expect = e-147
 Identities = 283/291 (97%), Gaps = 2/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtttcttgtgcctggcaaatacttggccaatggcaccaaattcccagcccagcacacg 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtttcttgtgtctggcaaatacttggccaatggcaccaaattcccagcccagcacacg 260

                                                                       
Query: 61  tgttgatagtgcttactttacctaaagagacataaggaaatcctgtgcaaagttggggtg 120
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttaatagtgctgactttacctaaagagacataaggaaatcctgtgcaaagttggggtg 320

                                                                       
Query: 121 ccaataagcctattcataagaacagtgttttgggttctagaatatgccagggcagtcttt 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaataagcctattcataaggacagtgttttgggttctagaatatgccagggcagtcttt 380

                                                                       
Query: 181 tagaggaaaggcaaacaattatgtccttgggcttaaggacttcaactagaggcaaaggaa 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 381 tagaggaaaggcaaacaattatgtccttgggcttaaggagttcaactagaggcaaaggag 440

                                                              
Query: 241 atgttggggaggggagag--tcaggttggaagccttgagtgagctaagaaa 289
           ||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 441 atgttggggaggggagagactcaggttggaagccttgagtgagctaagaaa 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 691
Length adjustment: 9
Effective length of query: 280
Effective length of database: 682
Effective search space:   190960
Effective search space used:   190960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)