Query= MSMg01no157_f15.b1 MSMg01no157_f15.b1 CHROMAT_FILE:
MSMg01no157_f15.b1 PHD_FILE: MSMg01no157_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:40 2005
(693 letters)
>mm_chr9_92359811_92360903
Length = 1093
Score = 1197 bits (619), Expect = 0.0
Identities = 673/691 (97%), Gaps = 2/691 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttagagtcacccttgcctacccaaggcagaacaaaacaagcatacatatctt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 204 ggaattctttagagtcacccttgcctacccaaggcagaacaaaacaagcatacatgtctt 263
Query: 64 gaagccacctagtaccccccatgtgtttcaggctattctgaggccaggggtttcagacac 123
||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 264 gaagccaccaagtacaccccatgtgtttcaggctattctgaggccaggggttccagaaac 323
Query: 124 taaaagcttcttcccctgtgtttctgcctctataaccaaagtggtcagtaaccttttcag 183
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaaagcttcttcccctgtgttcctgcctctataaccaaagtggtcagtaaccttttcag 383
Query: 184 ttatgcgagtacatatttcagttaagttgcaatattaaattaactgcccaaagtcaagac 243
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttatgcgagtacgtatttcagttaagttgcaatattaaattaactgcccaaagtcaagac 443
Query: 244 agactcagcagtctcacagttgccaataagaattccctcacaccagacatttgacacagg 303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 444 agactcagcagtctcacagttgccaacaagaattccctcacaccagacatttgacacagg 503
Query: 304 tttgaggtttccagatcactaacattctgacaacctaatgagtccagctaccccttcggg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttgaggtttccagatcactaacattctgacaacctaatgagtccagctaccccttcggg 563
Query: 364 tgtggtcattttctataataactcacgggactcagcactcagggctctccaagtgagtaa 423
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 564 tgtggtcattttctataataactcacgggactcaggactcagagctctccaagtgagtaa 623
Query: 424 agctctactacaagaaatgcaaatcaagattagccaaataaaaacacatgtgggaggggc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agctctactacaagaaatgcaaatcaagattagccaaataaaaacacatgtgggaggggc 683
Query: 484 tactgagttcggagtctttctacacaacctaaggagctggattcaatgcccagagcacac 543
|| ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tagtgatttcgaaccctttctacacaacctaaggagctggattcaatgcccagagcacac 743
Query: 544 actgtagacaaagaaacagacttttgaacgttgtgtcctgacctccacacattgccatgc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 actgtagacaaagaaacagacttttgaacgttgtgtcctgacctccacacattgccatgc 803
Query: 604 ctctta-aggagctgtcacctgcacatgtggcttttgtgtcctaaacacaaagcatccat 662
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 804 ctcttacag-agctgtcacctgcatatgtggcttttgtgtcctaaacacaaagcatccat 862
Query: 663 ctctttacctagggaagctatgaaactaact 693
|||||||||||||||||||||||||||||||
Sbjct: 863 ctctttacctagggaagctatgaaactaact 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_f15.g1 MSMg01no157_f15.g1 CHROMAT_FILE:
MSMg01no157_f15.g1 PHD_FILE: MSMg01no157_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:40 2005
(285 letters)
>mm_chr9_92511514_92512196
Length = 683
Score = 495 bits (256), Expect = e-144
Identities = 278/286 (97%), Gaps = 4/286 (1%)
Strand = Plus / Minus
Query: 1 agaatgatgttcacatgtcaacaagtttgaaatccttatgatttcatgcaacagttattt 60
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 483 agaatgatgttcacatgtcaacgagtttgaaattcttatgatttcatgcaacagttattt 424
Query: 61 tattgtgataggggtctttctcgcttgttaattttcctaccactccatgggtcccaaaga 120
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||
Sbjct: 423 tattgtgataggggtctttctcccttgtt-attttcctaccactccatgggtcccaagga 365
Query: 121 tcaacttcatggtttaaggcttagtggaaaccacccttacttgctgagtcagctcaccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcaacttcatggtttaaggcttagtggaaaccacccttacttgctgagtcagctcaccag 305
Query: 181 ctcacatttcctaactgttacagtgaataataatttttaaaaa-atcatcaaataagaaa 239
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 304 ctcacatttcctaactgttacagtgaataataattt--aaaaacatcatcaaataagaaa 247
Query: 240 aagaaaagtaaatggtatacatatgtagctaaaggaaaagaagcag 285
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aagaaaagtaaatggtatacatatgtagctaaaggaaaagaagcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 683
Length adjustment: 9
Effective length of query: 276
Effective length of database: 674
Effective search space: 186024
Effective search space used: 186024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
