BAC Information

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BAC

Clone NameMSMg01-157G20
Chromosome9 (Build37)
Map Location 40,051,403 - 40,051,821
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202
Downstream geneScn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157G20.T7 (MSMg01no157_g20.b1)MSMg01-157G20.TJ (MSMg01no157_g20.g1)
ACCAG357910AG357911
length742741
length of high quality
(start - end)
318 (32 - 349)---
definitionCHROMAT_FILE: MSMg01no157_g20.b1 PHD_FILE: MSMg01no157_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:46 2005CHROMAT_FILE: MSMg01no157_g20.g1 PHD_FILE: MSMg01no157_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATTTTTCT
GTGAATGTTTTTGTCATCTCTAACCACATCTGATGTTTTTGCGATCAAGT
ATAGCTACAAAGGAGGACTTAGGGTCTTTACATAGGGTCAGTACCCTCTT
GGTTTCCTTCCTCCCTTCCAAACCCTGAATAACTTGCCTACAAAAGCTTA
CTTCATAGTTACAAGTCTCAGGAAGAGCCTGGATGTTTGAGGAAGAATAC
AGTATTCAAGGGTGGAAGACAACACTAGTTTTTGTTGTTTGGCTTTTGTT
TTTGTTGGTTTCTTTGGTAGATTTTAGATCACCCTTGTAGATATCAGTAT
TTTATTTACCCTGTCCTGCCCGGTTTTATGTCAACTTGACACGAGCTAAA
GTCATTTGAGAAGAGAAAACCTCAATTGAGAAAAACATACCCACCAGATT
GGCCTGTGAGGCATTTTCTTTTTTTTTTTTTCTTTTTTTTTCTTTTTCCG
GAGCTGAGGACCTAACCCAGGGCCTTGTGCTTGCTAGGCAAGCATTCTAC
CACTGAACTAAATCCCCAACCCTGAGGCATTTTCTTAATTGTGGACTGAT
TTAGGCAAAACTTATATACAGTTTTCACATATAGGAATGAACCAGAGTAA
GCAAATAGCTATCATGCAAACATGAAGTCCCAGAGACCTAACTCAGCAAG
GTTGCCCTAACGCAGCTCAGAAGAGTTCAGGTGCCGCCCCAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCTTTAGGGAATTTATCCCCCTCACTTTCTTCTCGGT
TGGTTTGTGGGAGGCAGGGGGTCACTCTGCAGCCCAGGCTGATCTTTAAT
TCAAGGTGATCCCCCTGCCTCAGTTCCCCAAGGGTTGAAATTAACAAGCG
AATGCCACCACATCTAGTTTAACTTTCAATCTGGGCATTAAGCACTTACC
TCAGGTCATTCTCTTATAAGTCATTCTCTCCCGCATTAGTTCTAAAAAGG
GAAAAGGGGTTCATAAATTTTAGGGAATTGCCAAGGCTAAGTTCAGCCCT
TTGTATTCACCCCGGCGGCCCAATTTTCTATTGAGTCTGAACCAAGGAAT
GACTAAGGCTTAACAAAAAAAATTTCCTTTTTCCTTTGCTTTTCCTTAAC
CTTAACCTTTTTTTTAAAGTGGAGAGAAGGTTTTCTGCGGAAACTTGCAA
GGTCTAATGATCACGAGGTTCGGGGACATTATCCCATATAGAAAAGGGCT
ATTAATCTTTGAACTTCCCATTATTATGGAAAGGGTTGGATCTGTGACTG
CCTACTACCAGGTGTCCCTTCTTCACCTGACCCACACACTTTGGGGGAGC
ACTTGCCCTTGTGAAAAAGGAACATGTGAACGGTGGATAAAAGAAAGAAT
AACTTGACCCGTGAAGGCATACAAAAGAACCTTGGGGCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_g20.b1 MSMg01no157_g20.b1 CHROMAT_FILE:
MSMg01no157_g20.b1 PHD_FILE: MSMg01no157_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:46 2005
         (318 letters)



>mm_chr9_40051308_40052025
          Length = 718

 Score =  350 bits (181), Expect = e-101
 Identities = 306/419 (73%), Gaps = 108/419 (25%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatttttctgtgaatgtttttgtcatctctaaccacatctgatgtttttgcga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ggaattccatttttctgtgaatgtttttgtcatctctaaccacatctgatgtttttgcga 155

                                                                       
Query: 64  tcaagtatagctacaaaggaggacttagggtctttacatagggtcagtaccctcttggtt 123
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 156 tcaagtatagctacaaaggaggacttaggatctttacatagggtcagtaccctcttggtt 215

                                                                       
Query: 124 tccttcctcccttcca-------------------------------------------- 139
           ||||||||||||||||                                            
Sbjct: 216 tccttcctcccttccatcttttttctcgttttcctccattctccctcccatcctcccccc 275

                                                                       
Query: 139 ------------------------------------------------------------ 139
                                                                       
Sbjct: 276 tccccctttctctctcttcagtccacagctgtcttctctatacctggataagacccttcc 335

                                                                       
Query: 140 ----aaccctgaataacttgcctacaaaagcttacttcatagttacaagtctcaggaaga 195
               |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 336 cataaaccctgaataacttgcctacaaaagcttactgcatagttacaagtctcaggaaga 395

                                                                       
Query: 196 gcctggatgtttgaggaagaatacagtattcaagggtggaagacaacactagtttttgtt 255
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 396 gcctggatgtttgaggaagaatacagtattcaaggatggaagacaacactagtttttgtt 455

                                                                      
Query: 256 gtttggcttttgtttttgttggtttctttggtagattttagatcacccttgtagatatc 314
           ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 456 gtttggcttttgtttttgttggtttcactggtagattttagatcacccttgtagatatc 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)