BAC Information

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BAC

Clone NameMSMg01-157I23
Chromosome9 (Build37)
Map Location 59,782,507 - 59,782,801
singlet/doubletsinglet
Overlap genenone
Upstream geneNeo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361
Downstream geneNr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157I23.T7 (MSMg01no157_i23.b1)MSMg01-157I23.TJ (MSMg01no157_i23.g1)
ACCAG358009AG358010
length754755
length of high quality
(start - end)
326 (31 - 356)295 (58 - 352)
definitionCHROMAT_FILE: MSMg01no157_i23.b1 PHD_FILE: MSMg01no157_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:55 2005CHROMAT_FILE: MSMg01no157_i23.g1 PHD_FILE: MSMg01no157_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTCAGCAGA
AAACACTCCTGGGTGGTATAAGGAGGGCCACATCTCAGAAAATATTTCCA
TAGATCCCCTGGCAGCAAAGCTCCACAGTAGAGGGCTAGAGAGATGGCTC
AGTGGTGACCAGTGCCTACTGTACACTCTTGAGGATCGGAGTTCGGATCC
CAGACCTGCATAACAAGCCAGGTGGCATCACTCAAATGCCTGTAACTCAA
GTGTTAATGGATATGATACTTTCTTCTGGCCTTCATGTACACACAGGTGC
TCACACACACATACACACATGAACACAAACACACTTTTAAAGAGCTAACT
CTGTTTCTTTTAATCCCGCCCCGCTGGGGAGACGATTCAGTGACCAAGAA
TACTTGCTGCCCTGTAAAGGACTAGGGTTTTTGTCCTAGGCCGCTCACAG
TGAATCACAACCATCTTTAGCTCCAGTTCCAGGAGACCTGATGCCCCCTT
CTGACCTCTCAGGGCACTGAAAATACATAGTATACATACATACATACATA
CATACATACATACATACATACATACATACATACATACATACATGCAGGGA
AAACACTCATACATATGAAACCCTGAACTGGAAGAAAAAATAATGTGAGA
AGCCAGTGTCTGAGTGGGTCTCCCCAGATGTGTGATCAGAGAGATTCCCC
TCCAGATGANGCTCAACCCTGCCGTGTGAACCACATGAGAGGCACTCACG
CCGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAGTATAATGTTGAATAGGTAGGGAGGAAGTGGGCAGCCTTGA
GTACTTGTACTTTTATCTGAGAAACTAGACTAAAAGAAAAAGATGTCAAA
AGAGACAAGGTTGCTAAATATTGATTAAAGGATCAGTTCATCAAAGTAGA
GAAAGAAAAATGGCTGGGACTTGCTAAAAAAAACACAGCCTAGCCAAAAA
ACACAAGCTGTAGGTTCAAGAGATTTAAAGAACAATGCAGAAGGCATCTG
ACACCCTCCTCTGTTCATGAAATGTGTACAAGTACACACCATCAGCACAT
ACTCTTTTTTTGTACCCCCCCGCATCACACACACAGAGACACAGGGTCAT
CAGAGGGGTTGGCAGGTCGTCATTTGCTGCCAAGCCTGATGCCCTGAGTT
CAACCCCCAGGATCTAGGCAGGATCTACGTGGTGAAGAAGAGAATAACCT
CCTGCAGGCTATCCTCTGACCTCCACACACTCACTGCGGCACACACACAA
ATAAAAATTTACATAAAATAAAAATTTGAAAGTATATGATTGTAAATACA
TGCACATAATGCTGGAGCCCCTAAGTTTAGAAAATAAACACTGGAGAGGT
AGAGAGGAAGTTCAGTACTCCACTCTAATCAACAGACAAGGCATCTAGAC
AAGAAAAAACAAGCAACATCCGAGTCAAATTTTTCTTTACATGAGATGGA
ACTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_i23.g1 MSMg01no157_i23.g1 CHROMAT_FILE:
MSMg01no157_i23.g1 PHD_FILE: MSMg01no157_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:55 2005
         (295 letters)



>mm_chr9_59782307_59783001
          Length = 695

 Score =  571 bits (295), Expect = e-167
 Identities = 295/295 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtataatgttgaataggtagggaggaagtgggcagccttgagtacttgtacttttatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtataatgttgaataggtagggaggaagtgggcagccttgagtacttgtacttttatc 260

                                                                       
Query: 61  tgagaaactagactaaaagaaaaagatgtcaaaagagacaaggttgctaaatattgatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagaaactagactaaaagaaaaagatgtcaaaagagacaaggttgctaaatattgatta 320

                                                                       
Query: 121 aaggatcagttcatcaaagtagagaaagaaaaatggctgggacttgctaaaaaaaacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggatcagttcatcaaagtagagaaagaaaaatggctgggacttgctaaaaaaaacaca 380

                                                                       
Query: 181 gcctagccaaaaaacacaagctgtaggttcaagagatttaaagaacaatgcagaaggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctagccaaaaaacacaagctgtaggttcaagagatttaaagaacaatgcagaaggcat 440

                                                                  
Query: 241 ctgacaccctcctctgttcatgaaatgtgtacaagtacacaccatcagcacatac 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgacaccctcctctgttcatgaaatgtgtacaagtacacaccatcagcacatac 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)