BAC Information

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BAC

Clone NameMSMg01-157J14
Chromosome9 (Build37)
Map Location 78,431,567 - 78,431,866
singlet/doubletsinglet
Overlap geneSlc17a5
Upstream geneKlhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1
Downstream geneCd109, LOC384957, EG666456, LOC436085, LOC235509, LOC666479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157J14.T7 (MSMg01no157_j14.b1)MSMg01-157J14.TJ (MSMg01no157_j14.g1)
ACCAG358038AG358039
length730729
length of high quality
(start - end)
318 (39 - 356)300 (70 - 369)
definitionCHROMAT_FILE: MSMg01no157_j14.b1 PHD_FILE: MSMg01no157_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:58 2005CHROMAT_FILE: MSMg01no157_j14.g1 PHD_FILE: MSMg01no157_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
ATAAGAAAGCCAAGCATGACACCATGTTCCCGCAATCTGGCACTCAGGAG
TCGAAGACAGACAACTCCCCGGAGCTCGCTGACTGGCCAGCCTACAGGAA
CCATAAGCCCCAGGGTCACTGAGCTATCCTCACTCAAAACAAGAAGGTGG
AGAGTGATGGAGGAGATAGTCAGTGTCAATTTATGAACTCCACATGCACA
TGCACACCAAATGTACACACAAAAAAATTAATCTTCCAAATGACTGTATA
ATATATATGCAAATATATACATATACTGTATATACATAATACTCCAATAA
AAAATTTTTTATGCTCTTCCCCCCCCGACCTTCCTCGGGTTCATCATTAA
TAGTAACTCTCACATAGTGATATCTTTTTTTAAACTTGTGAGTATATCCA
TGGTGTGTGTATGTATATGTGGTTTATGTGTATTTGGTGGCCCCNCCTCT
CCCCCCCTCNCCCCCCTTCTTCTTCCTTCTTCTCCCTCCCCTCTCCTTCT
CTTCTTTCTCTTTCTTTCCTCTTCCCCTTTTTCCTTTCTCCTCCCTTCCT
TTTTTTCTCTCCCTTTCCCCTTTTCATTCTTTCCTCCCTCTTTTCCCCTC
TTTTTTTTTTTTCTCTTTTCCTCTTTTTTTCCTTTTCTTTTTCTCTTTTT
TCTCCCTTCCTTTTCTCTTTTATATCTTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTATTTTGCTGATGCGCTGAGTCACTGGAT
GGCTTCTCGCTGTGTCTGGGAATCAGCAGAGTCTGCGCCTGTAGTCTCAG
TCACAGGCACACACCACACCAACCCTGCTAGCAGCAACAGCCATGGGTGC
CCCTGGCTGCTTGTTTTCTCTAGAGACAGAGGTGCCAGCAGTTCAGTATC
ACTGCTGTGTTTCAAAAGAATTGATTTTTCTTTTTTTATTTATCTTTTAT
TTTCAAAGGAAGGGAACTTAGCTGAAGGAGCCCACGGAACCTTTTTGCAT
TTCTGTCTCTCTCTTCCATCCCTCGCCCCCGAGTTGCTCTTGTCCCATCT
GTTCCCACTCTCTGAGACTCCACCCTGGAGGGCCTCATTTCAAAGGTTTC
CATCTTTCCCTTACACTCCCCGTACATTCACAATCCTTCTGCAACATTTC
TTTTCAAATTAGGCGGATTTCTACTCACGGTGCATTTCTGTCCGTCATGT
GCTAACTTATATAATAGGTCAGTTAAAAATGTTCAACGGCTGAGAAACAC
CTAATAAAACCTGGCTGATTGGCAAGGTCAGACCACTGAGCTGTACAACC
AGGGATGGGTAACAATCATTTTTTGTGGAGCATGTGGAATCTGTATATAA
AACATATGCTCCTTGTCCTTATCAAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_j14.g1 MSMg01no157_j14.g1 CHROMAT_FILE:
MSMg01no157_j14.g1 PHD_FILE: MSMg01no157_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:58 2005
         (300 letters)



>mm_chr9_78431367_78432066
          Length = 700

 Score =  557 bits (288), Expect = e-163
 Identities = 297/300 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttattttgctgatgcgctgagtcactggatggcttctcgctgtgtctgggaatcagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttattttgctgatgcgctgagtcactggatggcttctcgctgtgtctgggaatcagcag 260

                                                                       
Query: 61  agtctgcgcctgtagtctcagtcacaggcacacaccacaccaaccctgctagcagcaaca 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 agtctgcgcctgtagtctcagtcacaggcacacaccacatcaaccctgctagcagcaaca 320

                                                                       
Query: 121 gccatgggtgcccctggctgcttgttttctctagagacagaggtgccagcagttcagtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccatgggtgcccctggctgcttgttttctctagagacagaggtgccagcagttcagtat 380

                                                                       
Query: 181 cactgctgtgtttcaaaagaattgatttttctttttttatttatcttttattttcaaagg 240
           ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 cactgttgtgtttcaaaagaattgatttttctttttttatttatgttttattttcaaagg 440

                                                                       
Query: 241 aagggaacttagctgaaggagcccacggaacctttttgcatttctgtctctctcttccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagggaacttagctgaaggagcccacggaacctttttgcatttctgtctctctcttccat 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)