Query= MSMg01no157_n09.b1 MSMg01no157_n09.b1 CHROMAT_FILE:
MSMg01no157_n09.b1 PHD_FILE: MSMg01no157_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:15 2005
(663 letters)
>mm_chr9_52781379_52782441
Length = 1063
Score = 1025 bits (530), Expect = 0.0
Identities = 615/656 (93%), Gaps = 22/656 (3%)
Strand = Plus / Minus
Query: 5 gaattcctttgctccaggttttagccatgagattgcaggggaagaatgacttcatatttc 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 gaattcctttgcaggaggttttagccatgagattgcaggggaagaatgacttcatatttc 926
Query: 65 cccagaccagcccaactagggtcactggacaagctgatagacaagctcccaactctacac 124
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 cccagatcagcagaactagggtcactggacaagctgatagacaagctcccaactctacac 866
Query: 125 gatacatagtccagtgatagggctcatatatctgtttatcaacatgccctttggtgaaca 184
| |||| |||||||||||||||||||||||||||||||||
Sbjct: 865 --------------t-atag-------atatctgtttatcaacatgccctttggtgaaca 828
Query: 185 ctaaaacctgagaagcattgatctagctaaaatgccccatcttccaatctagggtgtatc 244
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 827 ctaaaacctgagaagcattgatctagccaaaatgccccatcttccaatctggggtgtatc 768
Query: 245 agaggatgcaaggaagaggtagaagaagaaggaggtgagagctgtgtatatgaccccttt 304
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 767 agaggatgcaaggaagaggtagaagaagaaggaggtgagagctgtgtatttgaccccttt 708
Query: 305 catttccaagcatcagcccagaaagggggtgtgatttagagaattgcttgaacacggagt 364
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 cgtttccaagcatcagcccagaaagggggtgtgatttagagaattgcttgaacacggagt 648
Query: 365 tgggggtctctctcactcctgtttcgtctttagaattctccctttaatttgcttacatcc 424
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 647 tgggggtctctctcactcctgtttcttctttagaattccccctttaatttgcttacatcc 588
Query: 425 agtgagaaaagtgacaaacctcagaggacctgatcaagttgaaaacacttgaagttttgg 484
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 587 agtgagagaagtgacaaacctcagaggacctaatcaagttgaaaacacttgaagttttgg 528
Query: 485 ttttcagtttcagtctctagtccctggctatatggaaacatcccagactactcagaggag 544
||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct: 527 ttttcagtttcagtctctagtccctggctatatagaaacaccccagactactcagcggag 468
Query: 545 attctaacaaaggcatttgtccagagaactatctcaatctgggtgaggtgactttgttca 604
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 467 agtctaacaaaggcatttgtccagagaactatctcaatctgagtgaggtgactttgttca 408
Query: 605 agggacgagaagaacagttatcaggccaaggttagtgttgtaggggtgggcgctca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agggacgagaagaacagttatcaggccaaggttagtgttgtaggggtgggcgctca 352
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_n09.g1 MSMg01no157_n09.g1 CHROMAT_FILE:
MSMg01no157_n09.g1 PHD_FILE: MSMg01no157_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:15 2005
(283 letters)
>mm_chr9_52622983_52623665
Length = 683
Score = 540 bits (279), Expect = e-158
Identities = 282/283 (99%)
Strand = Plus / Plus
Query: 1 attttggctagctttttaaaaagaaggaaaaaaagagagagagatggtatattttagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttggctagctttttaaaaagaaggaaaaaaagagagagagatggtatattttagctt 260
Query: 61 tctgtcattagcaagctgggctacagagaaatgggccctgaatatagtttagtgaaaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tctgtcattagcaagctgggctacagagaaatgggccctgaatatagtttattgaaaacc 320
Query: 121 agctggctcaatgactctagaaaacaactttatgctgtataatgtgaagatataagcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctggctcaatgactctagaaaacaactttatgctgtataatgtgaagatataagcttt 380
Query: 181 aacagtttttaacccagaaaatcttacagttatggaaacttaaaggagaaagtaaattgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagtttttaacccagaaaatcttacagttatggaaacttaaaggagaaagtaaattgc 440
Query: 241 atgttaatgtcgcagatattaccagccctgttatttacaatca 283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgttaatgtcgcagatattaccagccctgttatttacaatca 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
