BAC Information

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BAC

Clone NameMSMg01-158B07
Chromosome9 (Build37)
Map Location 106,815,159 - 106,815,440
singlet/doubletsinglet
Overlap geneDock3
Upstream geneEG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet
Downstream geneMapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158B07.T7 (MSMg01no158_b07.b1)MSMg01-158B07.TJ (MSMg01no158_b07.g1)
ACCAG358392AG358393
length760728
length of high quality
(start - end)
95 (84 - 178)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no158_b07.b1 PHD_FILE: MSMg01no158_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:33 2005CHROMAT_FILE: MSMg01no158_b07.g1 PHD_FILE: MSMg01no158_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTAAAAGTCTGAAATCATTAACCCAGGAGACCAAACTGTGGGG
GCCAGCCAGATAGCTCAGTTGGTAAAGGTACCAGTTGCCAAACCTAACCA
CCTGAATTCAATCCCTGAGATCCACGGGATCCTGTGTGTGTGTGTAAATT
AATTCACAATTCCCCGGATCTTACCATCTTCTTACCTCTTGTGCGACCTC
TAATCTTAGATGTAACCTGCACCAGCTAGGAAAGAGAGAACCACCATGCA
CAAATTCCCCTCCATTAGACTGGTTTTTGTCTACTTTCTTGCCTATCAAT
TAATATCAGCGTTTTTTTTTTTACCCCCCCCCCCCCCGTTCCGCATTTCA
CAGTGTTTGCCGCCTTCATGCCCCCCCCCCCCAACACCATAAGTTTTTGT
TCCCGCATTTCCCTTTTCCACTCCCTTGCTTATTTGCTCTCCCTACTTTT
CCTCCTTTCCCCCCCTTCCCCTTTTGCCCCTTTTCTCTTTTTTGCCTTTT
TTCCCTCCCCTTCAACACTTTCCTCCTCCCTACCCTTTCGCCCCCCTTTT
CCCTCCCCCCCCTCTTGTTCCTTCCCCCCCCTTCCCCCTCTTTCTCACTT
CCCCTTTCCCCCCTCTCCTATTGCCCCTCTTTTCCCCCCCCCTTTCTCCC
CCCCCCCCCCCCCTTTTTCCCCTTCCCCTTTTTCCTCCCCCCCTTTTCTC
CTCCCTCTCT
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGTAGAGGATGCAGGAAACTGA
ATGTATGTCCATAGCAAGTCTGAGGTGTGCCTGCTTCTTGGGAACTCAGG
CTAAGTTTAGCAAAACTTGTTTAGCTTATTGCACTTGTCTGCACCCCCTG
CAGAGCCTGTGGATTGAGCGCACCACGCTGACACTGACCCACAGTTTGCC
TGGCATCTCTCGGTGGTTTGAAGTGGAAAGAAGGGAACTGGTAAGCTAGA
CCTCAGAAGTTTTAAATTCCCCTTTTTCTCAGTTTCATCTCTAGGAAGCT
TTCTCTGATAATTAAAGACCAACTTCGCCCACCTGCCTGGCTAGTCCTGT
GCTGGGAGCTTTTATATCTCCTATCTAGACCACAGGACACTCCTAGGCTT
CAGGTACTTTTCAATTTACAAATGAAAAAAAAAATCTCTGAGATTCAAGA
AGCCAGAAATCCCTGATGTCACAAATGATCCTCCTCACTATTCTCTGCAC
TTGGAGTGCCTTGAATCAGAAGAGATGGTGTGTTCTGGAACTCACTCTGT
AGATCAGCCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCTGAG
TGCTGGGATTAAAGTCATGCACCACCACTGCCTGGCCTGAATCAGATGAG
AAATCAGAGAANACCTAGGACGTATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_b07.g1 MSMg01no158_b07.g1 CHROMAT_FILE:
MSMg01no158_b07.g1 PHD_FILE: MSMg01no158_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:33 2005
         (284 letters)



>mm_chr9_106814959_106815642
          Length = 684

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggtagaggatgcaggaaactgaatgtatgtccatagcaagtctgaggtgtgcctgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aaggtagaggatgcaggaaactgaatgtatgtccatagcaagtctgaggtgtgcctgctt 423

                                                                       
Query: 61  cttgggaactcaggctaagtttagcaaaacttgtttagcttattgcacttgtctgcaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cttgggaactcaggctaagtttagcaaaacttgtttagcttattgcacttgtctgcaccc 363

                                                                       
Query: 121 cctgcagagcctgtggattgagcgcaccacgctgacactgacccacagtttgcctggcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cctgcagagcctgtggattgagcgcaccacgctgacactgacccacagtttgcctggcat 303

                                                                       
Query: 181 ctctcggtggtttgaagtggaaagaagggaactggtaagctagacctcagaagttttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctctcggtggtttgaagtggaaagaagggaactggtaagctagacctcagaagttttaaa 243

                                                     
Query: 241 ttcccctttttctcagtttcatctctaggaagctttctctga 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttcccctttttctcagtttcatctctaggaagctttctctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)