BAC Information

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BAC

Clone NameMSMg01-158B24
Chromosome9 (Build37)
Map Location 78,325,006 - 78,325,115
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1
Downstream geneEef1a1, Slc17a5, Cd109, LOC384957, EG666456, LOC436085, LOC235509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158B24.T7 (MSMg01no158_b24.b1)MSMg01-158B24.TJ (MSMg01no158_b24.g1)
ACCAG358424AG358425
length746786
length of high quality
(start - end)
321 (40 - 360)291 (71 - 361)
definitionCHROMAT_FILE: MSMg01no158_b24.b1 PHD_FILE: MSMg01no158_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:36 2005CHROMAT_FILE: MSMg01no158_b24.g1 PHD_FILE: MSMg01no158_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TGCACACTATACATCAATGGTTCCCAATCTTTCTAATGCTTAGGCCCTTT
AATACATTTCGCGTTGTGCCGGATTTCCAATCGTACATTTCTTTGCTACT
TCATAACTCGACCACTCTTCTGAATTGTAATGTAAATATCTGATATACAG
GATTATATTCTGATCCCAGGTTGAGACTACTGCCTTAACTGGAGTAGGTT
AAAAAGTACAAAAGGGTAGCCAGAAATGGTGGAGCACACCTTTATCACAG
AACTTGGGAGGCAGAATCATGTAGATCGGAGTTCAAGGCCAGCCTGGTCT
AAATAGGATATTCCAGGACGCTCGGGGCGACATAGATATTCTGTCTCAAT
AAGGAAGGACACCCCCATCAAGAGCTGACATTTTAATGATGCCCTTTTCC
CAAACTACTGGGTAACTTAAAATAATTTGCTTGGGCCAGGCGTGGTGGTG
CATGTCTTTAAGCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAG
TTCGAGGCCAGTCTGGTCTACTAAGTGAGTTCACGGTCAGCCAGGGTTGC
ACAGAGAAACCCTGTCTCGAAAAAACATAAAAAAACTTGCTTGACTCAAG
ATTTAGGCCCCATTTTTAAGTCCACTGTGCCATTCTTGTAAACCAGACTA
GAGCGCTGCTAGAAACCGTTACGAAATAACTTATCCTCTCCCCCAA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGGGCCAAAGGCTTGGTAGGCAAGCCTTCC
ACCACGTGAGCTACATAGGTAGTCTTTAGTCTTGATTAAAATCAAACACG
TGAAAACTAAGTGCTCTAAAAGGCTAGCTGAATTCTCATATTGGTTCCCT
GAACTGTAGAGTGAGGGCTATTATGGTTGGAAAGGCCAAATGGAAGCCTT
TAGAGTTGCCTCTGCCAAAGAAAATAGTGAATCAAAAACAGTATCGTATT
CCTGGAGGAATTGCAGAAATTACTGCCACTATCAAGGACTTGAAAGATGC
AGGGGTGGTGTTTTTTTCCCCCCCCCCCCCCANNTNNNNAATCTGACCAA
TGTTTTTTTTTGTCCCCCCCCCAAAAAAAAAAAAATGTNTTTTGTGCGTG
TTTTAATGTATTAACCCTCATTGCCATTGTCTTCTACACTCAATTCTCTC
GCCCCATCACCTCAACTTATCTCTCTTACTTAATCTTTTACACCCCCACC
TCTTCTATTTTTTTTCACCTCATTCCTTATATTTATTACTTAATATATAC
ACCACAATCCCCCTTTTTCTTTCTTTTTTCTTCTTTCTTTTTCCCCCACA
CCCCTCTCTTTATCCCCCCTTTTTTATAACTTTAAACTTCATACCATTTT
ATTATTTATTCTCTTCTCCACCCCCCTTTTTTTCTTTTTTTCCCCACATA
ACTCCAACTCTTTTTTTTTTTTTCTCTCACTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_b24.g1 MSMg01no158_b24.g1 CHROMAT_FILE:
MSMg01no158_b24.g1 PHD_FILE: MSMg01no158_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:36 2005
         (291 letters)



>mm_chr9_78324812_78325502
          Length = 691

 Score =  197 bits (102), Expect = 5e-55
 Identities = 108/110 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggccaaaggcttggtaggcaagccttccaccacgtgagctacataggtagtctttagt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agggccaaaggtttggtaggcaagccttccaccacgtgagctacataggtagtctttagt 245

                                                             
Query: 61  cttgattaaaatcaaacacgtgaaaactaagtgctctaaaaggctagctg 110
           ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 244 cttgattaaaatcaaacacgtgaaagctaagtgctctaaaaggctagctg 195


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)