BAC Information

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BAC

Clone NameMSMg01-158C12
Chromosome9 (Build37)
Map Location 115,366,123 - 115,512,732
singlet/doubletdoublet
Overlap genenone
Upstream geneGlb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
Downstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik, Rbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158C12.T7 (MSMg01no158_c12.b1)MSMg01-158C12.TJ (MSMg01no158_c12.g1)
ACCAG358447AG358448
length708710
length of high quality
(start - end)
322 (32 - 353)273 (63 - 335)
definitionCHROMAT_FILE: MSMg01no158_c12.b1 PHD_FILE: MSMg01no158_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:38 2005CHROMAT_FILE: MSMg01no158_c12.g1 PHD_FILE: MSMg01no158_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,366,123 - 115,366,439)(115,512,460 - 115,512,732)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGCCCTGA
GGTTACTTTCTGGCTGAAAACAAAATCACTTTGCCCAGTAGGTGACTGCG
ACTTTCAAGGAGGACCCCAGAGCTCACCAAAGAGGACCCCCAAAACTGAG
GAAGACTCCTCAGAACTGAATCCCAACAGATGAGATGAGACTTGCAGGAG
AGCTGTGTGTTTAATGGGATTGTTTTCCCCCAGGCAGCTAAATAAGTTTT
CATTCTGAACACATACATATCAGCCTCCCCCCACCCCACCGCCCCCAAAC
TCTTGTCTGTTTAAGCTGTTGAGATAACCAGAATTAGATAAGAAAAGCTC
ATACTGTACGCCCCGCCCTGTACTTGTTATCCCAGTGCCTGGGTGGTAGG
TGCCCCACCATCAGAAGTATAAGGTCATCCTTGGTTGCAGAGTAAATTTG
AGGTCAGAATGAACTACATATGAGACCATGCCTCAAAAAATTCTCATTCT
ACTTATAAAAAGTATGTATATAAGTATACTGATATGTGATACACAATGTT
GTATATTATAATACAGCTGTTTTATAATATGTGGTTTATAATTTAATATA
ATTTATAAAATGTATTTTGTATCATAAACACATCTAGTGGTTCACTCTTT
GCAGTGCTGGAGATGGACCTGCTGAGCAAGGTCTGTACCACTGAACTAAC
CTCCAGCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAAAGTGTCACTTCAATAAGCAAAAAACACACCTGAAGT
CTAACTCATTTGACCACCCCCGCCCTGTTGTCAATTACCCACAGCATGCA
AAGGAGGCGGACCCAAGGATGCAGACCCAAAGGAGGATGCCTTTGGAGTG
GGACCTCCTCTCTGGAGGGTGCCTTTCTCGCACTGTAAAAGTGGAGTCCC
GTGGCTGGAGTGTTGCTATTCCTAGAATACACAGGCCCCTGGTTTGAAGC
CCAGCACAAAAGGATTAGGAAAAATAAAGAATAGACTGTGGTGCATATTC
TGGATCGTTCCCCATGCANCCGCCTGTTGGAAACCAAGCAAATGGCTCCG
GAACAGCACCCCATAAAGAAAAAAAAGAACGTTTGGTTTGTGGGAAGAAA
AAAAAAATCATTTCAGGAGGGCATACTCCTGAGATGTGTCTTCTCAAATC
ATATAAATCGTTACTCCCTGCTTTGGAGATAACGCTATGAAGAAATGGGG
CTAGGAGGCCATTGATCACGAGGGCAGGGGTTTGAATGAGAAATGTCCCT
CATAGGCTCATAGAGTTGAACACTTGGCCATGGAGCTGTCTTTGTAGCTT
CCGGACCCTTTAGGAGGGCCAGCCTTGCTGGAGGAAGTGAATCCCTAAGG
TTGCGCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_c12.b1 MSMg01no158_c12.b1 CHROMAT_FILE:
MSMg01no158_c12.b1 PHD_FILE: MSMg01no158_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:38 2005
         (322 letters)



>mm_chr9_115365920_115366641
          Length = 722

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagccctgaggttactttctggctgaaaacaaaatcactttgcccagtaggtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagccctgaggttactttctggctgaaaacaaaatcactttgcccagtaggtg 263

                                                                       
Query: 64  actgcgactttcaaggaggaccccagagctcaccaaagaggacccccaaaactgaggaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actgcgactttcaaggaggaccccagagctcaccaaagaggacccccaaaactgaggaag 323

                                                                       
Query: 124 actcctcagaactgaatcccaacagatgagatgagacttgcaggagagctgtgtgtttaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actcctcagaactgaatcccaacagatgagatgagacttgcaggagagctgtgtgtttaa 383

                                                                       
Query: 184 tgggattgttttcccccaggcagctaaataagttttcattctgaacacatacatatcagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgggattgttttcccccaggcagctaaataagttttcattctgaacacatacatatcagc 443

                                                                       
Query: 244 ctccccccaccccaccgcccccaaactcttgtctgtttaagctgttgagataaccagaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctccccccaccccaccgcccccaaactcttgtctgtttaagctgttgagataaccagaat 503

                            
Query: 304 tagataagaaaagctca 320
           |||||||||||||||||
Sbjct: 504 tagataagaaaagctca 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no158_c12.g1 MSMg01no158_c12.g1 CHROMAT_FILE:
MSMg01no158_c12.g1 PHD_FILE: MSMg01no158_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:38 2005
         (273 letters)



>mm_chr9_115512260_115512932
          Length = 673

 Score =  497 bits (257), Expect = e-145
 Identities = 269/273 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtgtcacttcaataagcaaaaaacacacctgaagtctaactcatttgaccacccccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aaagtgtcacttcaataagcaaaaaacacacctgaagtctaactcatttgaccacccccg 414

                                                                       
Query: 61  ccctgttgtcaattacccacagcatgcaaaggaggcggacccaaggatgcagacccaaag 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 413 ccctgttgtcaattacccacagcatgcagaggaggcggacccaaggatgcagacccaaag 354

                                                                       
Query: 121 gaggatgcctttggagtgggacctcctctctggagggtgcctttctcgcactgtaaaagt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 353 gaggatgcctttggagtgggacctcctctctggagggtgcctttctcgcactgtaagagt 294

                                                                       
Query: 181 ggagtcccgtggctggagtgttgctattcctagaatacacaggcccctggtttgaagccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ggagtcccgtggctggagtgttgctattcctagaatacacaggcccctggtttgaagccc 234

                                            
Query: 241 agcacaaaaggattaggaaaaataaagaataga 273
           ||||||||||||  |||||||||||||||||||
Sbjct: 233 agcacaaaaggaaaaggaaaaataaagaataga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)