BAC Information

Click to search

BAC

Clone NameMSMg01-158E11
Chromosome9 (Build37)
Map Location 43,368,615 - 43,368,903
singlet/doubletsinglet
Overlap genenone
Upstream geneGrik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
Downstream geneLOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158E11.T7 (MSMg01no158_e11.b1)MSMg01-158E11.TJ (MSMg01no158_e11.g1)
ACCAG358535AG358536
length758701
length of high quality
(start - end)
214 (37 - 250)289 (116 - 404)
definitionCHROMAT_FILE: MSMg01no158_e11.b1 PHD_FILE: MSMg01no158_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:47 2005CHROMAT_FILE: MSMg01no158_e11.g1 PHD_FILE: MSMg01no158_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGG
GACTCTTGGGAGGGAGGGTATATAGATGCAAGAGCTCTGAGAGGAGTATA
GCGCTTGCTGTCTCTCCTGCTGTAGATGTCTGCTGCTGTTGTTGGCTTCG
AGTTGCTGGTTGCTGGTTGTTGGCTTCGAGTTGCTGGTTGTTGGTTGTTG
TTGGTTGTTAGTTGCTGGTTGCTGGTTGCTGGTTGCTGGTTGCTGGTTGT
TGTTGGTTGTTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGATACGTTTTTTT
TTTTCCCCCCCCCCCCCCTCCTTCTTTCACTGTATTTTTTGTTTTCGTAT
CCCCCCCCCTCTTAAAAAAAAAATATTTTTCTCTCGTAGGGGTCTTATAC
ATATCATTCTTCATCATCCTGCTTTCATCATCCTTTTACCACATTGTTCT
TTCTTCTTCCCATTATTCGTTCCTTCTTCCCCTTTTATTTCTTTTCATAT
TTTGCTCTTTTTCCTCTTCTCCATTCACTCCCTATTCTTTGTTTTCCCTC
CTCCTTCTTTCTTCCTTCTCCTTCTTTCTCCCACCCCTCCTTTCGTTTTT
CTTTTCTTTTGATTCTTTGTCCTTCCTTCTATTCCTTCCTTCCCTTCCCT
CCTCCTTTTTTTTCCCTTCCTCTTATTTACCACCTTTATCTACTTATTCC
TTGTCTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGGCTAGCATAGGTCAGAGTGAGTTCAAGGCCA
CCTTAGGCTATACAGAAAACCTGTGATTCAAACAATCTAAACAACTAAAT
TAAACAAACAAATGGCAGCTGGGTATGGGGTCCATGCCTGCAAGCCCAGC
ACCCAGGAAGCAGAGGCAGGAGGATTGCATAAGTTCAAGGTCAACCTGGT
CTACATAGTGTGAGCCTCTCCCTCCAAACCAAACAAACAACTCTCTCTGT
CCAACAGAAATTCCAGAACACTTGTCCTAGACAGGCCTCGGGAGGTTGAG
CTTGGGAACTGAGGAGTCAGCATCCTAGACAAATTTTCCGGATCATTCCT
GTATTCCCCCACCCCAGAGAGTCACTAGATAGTCCTTCCGTAGGCTCTGT
GCTCAGCATGTGACTTGCATTTCAGGGAGATGGGTGACTATTCTCCCAGG
GTGGAAAAGGATGATATTGACAGTTCCAACAGGGACTAGGATCCAGCCAC
AAACAAATGCTGTCAGAACTCATGGGAGCATCTAATCTGGNCGAATGGGA
GGAGTTTGGGAGTCTGANAGTATTCCATTTGAGCTTGTACTTAAGATTGC
CTCCTTTTGTCCAGGGCATTTATTCAGGCCATGTTTCAACCAACTGCTCA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_e11.g1 MSMg01no158_e11.g1 CHROMAT_FILE:
MSMg01no158_e11.g1 PHD_FILE: MSMg01no158_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:47 2005
         (289 letters)



>mm_chr9_43368243_43368931
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacctgtgattcaaacaatctaaacaactaaattaaacaaacaaatggcagctgggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaaacctgtgattcaaacaatctaaacaactaaattaaacaaacaaatggcagctgggta 602

                                                                       
Query: 61  tggggtccatgcctgcaagcccagcacccaggaagcagaggcaggaggattgcataagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tggggtccatgcctgcaagcccagcacccaggaagcagaggcaggaggattgcataagtt 542

                                                                       
Query: 121 caaggtcaacctggtctacatagtgtgagcctctccctccaaaccaaacaaacaactctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caaggtcaacctggtctacatagtgtgagcctctccctccaaaccaaacaaacaactctc 482

                                                                       
Query: 181 tctgtccaacagaaattccagaacacttgtcctagacaggcctcgggaggttgagcttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tctgtccaacagaaattccagaacacttgtcctagacaggcctcgggaggttgagcttgg 422

                                                            
Query: 241 gaactgaggagtcagcatcctagacaaattttccggatcattcctgtat 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaactgaggagtcagcatcctagacaaattttccggatcattcctgtat 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)