BAC Information

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BAC

Clone NameMSMg01-158I13
Chromosome9 (Build37)
Map Location 23,347,029 - 23,347,317
singlet/doubletsinglet
Overlap genenone
Upstream geneBbs9, Bmper
Downstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1, Dpy19l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158I13.T7 (MSMg01no158_i13.b1)MSMg01-158I13.TJ (MSMg01no158_i13.g1)
ACCAG358723AG358724
length691700
length of high quality
(start - end)
85 (215 - 299)289 (66 - 354)
definitionCHROMAT_FILE: MSMg01no158_i13.b1 PHD_FILE: MSMg01no158_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:04 2005CHROMAT_FILE: MSMg01no158_i13.g1 PHD_FILE: MSMg01no158_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCGAACCCGCCGCGGAANCCANGAT
TTACCGCACGAGGGGNCCNAANNNCNCCAGAGAGAGNCGGAACAGNCNNN
GATTTTTTACCANAAAAAAACGAGGCNNNGANCANGGNNAANAANNANNA
GAAAGCNNCAANGAAGANAAACNCGAGAAGNCGCAGAGCAACAGNCCCAG
CGCCGGGCNCCNGGGAGAAGAACCAANCACAAAGCAAATTTTTGNTCCTT
ACAGGCTTACACAGCCTGTTCTGTAGGGGTAGCTGGCCACAGCTCTACTA
GTTTTTTTTTTTTGCAGACAGCAGCCNCAGCAACGGCCNCAAGGGAAGAA
CCCCCCCCCACCGAAAAACNACAAAAANGGAAAGGANNCCNAACCAAGCC
CCCACCCCACGAAAGAAAAACAANAAAACAGGGAGCAAACGCCAAAAACC
NGCCAGGAAACGGCAAGAAAAAGACCACAACCAGCCAGAAAAACACAGCA
CCAACGGCAAGAGGCCACACCGACACCCACCAAAAAGCGGGAAACAGCAA
ACCCGCACCCGAGCAAGNCCAAAGCCGGAAGAACNCACCCCAAAAAACNA
GCCAGGCCCAAAGAAAGAAAAAAACCCAAGGNCNCCAACCATTTTCCGTT
CCTCCTGAAACCCCTCTTAATCTCTAGCCTTGACGTCTCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAATCAAAGCCTTTATAAGGGATGTGGAGAGGAAAC
CATCACAAGGACAAGAGGAAGTTCAATGCTCTGAGGACATGACCGAGGAC
ACATGCTCAGAGCAGGAAGAGCAGAGTTAGAGCGATGTCTGGGCTCTCAC
ATTCTAGCTTACCTCCCTTGCCCTGATTGTGGTAAGGAGAGAACAGATGC
TATGGGGTGCTTTGCAGGGTCTCAGGAATTCCAGTGTAAGCAAAGTAGTC
TGGGGGGCAGTGTCTGTCCATTTGTCCCCCTTCTTTCTCTCCTGCACTGA
TTCTTTTTTTCCCCCCCACCTTAATATAGGAAATGTTCCATTTTTGAACC
TGATCCCCCCCCACATAAATTACCAGTTTTGGGTCAGCAGTTGGAGACTC
TGGAAGATGGCATGTGGCAGATGTGATTTCCTGTTTCTTGAGAATCTTAA
TGTCAAAAATATTTCTTTACTGTTTCAAACTGGAGGTGGGGATTCATGGC
ATACCCTCAAAAGACTTTCACAAACAAGACTCTTGAAAAGATTATTTTTT
ATTTCCAAATTAACAAGCAGGACCCATATGAATCTTATTTCCCATAAATT
TCACACAGCTTCTTTTGTTGAACTGGGAAATTACAAACTTGCNGAATCAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_i13.g1 MSMg01no158_i13.g1 CHROMAT_FILE:
MSMg01no158_i13.g1 PHD_FILE: MSMg01no158_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:04 2005
         (289 letters)



>mm_chr9_23346829_23347521
          Length = 693

 Score =  501 bits (259), Expect = e-146
 Identities = 280/289 (96%), Gaps = 4/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcaaagcctttataagggatgtggagaggaaaccatcacaaggacaagaggaagttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcaaagcctttataagggatgtggagaggaaaccatcacaaggacaagaggaagttca 260

                                                                       
Query: 61  atgctctgaggacatgaccgaggacacatgctcagagcaggaagagcagagttagagcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 atgctctgaggacatgaccgaggacacatgctcagagcaggaagagcagagttagagtga 320

                                                                       
Query: 121 tgtctgggctctcacattctagcttacctcccttgccctgattgtggtaaggagagaaca 180
           |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||
Sbjct: 321 tgtctgggctctcacattctagcttacctcccttgcccaggctgtggtaaggagagaaca 380

                                                                       
Query: 181 gatgctatggggtgctttgcagggtctcaggaattccagtgtaagcaaagtagtctgggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gatgctatggggtgctttgcagggtctcaggaattccagtgtaagcaaagtagtcggggg 440

                                                            
Query: 241 g----gcagtgtctgtccatttgtcccccttctttctctcctgcactga 285
           |    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggggcagtgtctgtccatttgtcccccttctttctctcctgcactga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 693
Length adjustment: 9
Effective length of query: 280
Effective length of database: 684
Effective search space:   191520
Effective search space used:   191520
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)